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From: Ben Woodcroft <b.woodcroft@uq.edu.au>
To: "guix-devel@gnu.org" <guix-devel@gnu.org>
Subject: [PATCH] Update biopython to 1.66.
Date: Wed, 11 Nov 2015 21:28:00 +1000	[thread overview]
Message-ID: <56432640.8050904@uq.edu.au> (raw)

[-- Attachment #1: Type: text/plain, Size: 127 bytes --]

I also figure with the shiny new updaters it might make things easier if 
pypi is used instead of the biopython site.

thanks.

[-- Attachment #2: 0001-gnu-python-biopython-python2-biopython-Update-to-1.6.patch --]
[-- Type: text/x-patch, Size: 1487 bytes --]

From bb6e9ba482ea8602afafd9f6a310a8053544bd80 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrustben@gmail.com>
Date: Wed, 11 Nov 2015 21:27:02 +1000
Subject: [PATCH] gnu: python-biopython, python2-biopython: Update to 1.66.

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython): Update to 1.66.
[source]: Use PyPi instead of biopython.org.
---
 gnu/packages/bioinformatics.scm | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f13e405..706a871 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -348,15 +348,14 @@ provide a coordinated and extensible framework to do computational biology.")
 (define-public python-biopython
   (package
     (name "python-biopython")
-    (version "1.65")
+    (version "1.66")
     (source (origin
               (method url-fetch)
-              (uri (string-append
-                    "http://biopython.org/DIST/biopython-"
-                    version ".tar.gz"))
+              ;; use PyPi rather than biopython.org to ease updating
+              (uri (pypi-uri "biopython" version))
               (sha256
                (base32
-                "13m8s9jkrw40zvdp1rl709n6lmgdh4f52aann7gzr6sfp0fwhg26"))))
+                "1gdv92593klimg22icf5j9by7xiq86jnwzkpz4abaa05ylkdf6hp"))))
     (build-system python-build-system)
     (inputs
      `(("python-numpy" ,python-numpy)))
-- 
2.5.0


             reply	other threads:[~2015-11-11 11:28 UTC|newest]

Thread overview: 5+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2015-11-11 11:28 Ben Woodcroft [this message]
2015-12-09 21:23 ` [PATCH] Update biopython to 1.66 Ludovic Courtès
2015-12-10  9:31   ` Ricardo Wurmus
2015-12-10 11:04     ` Ben Woodcroft
2015-12-10 13:18   ` Ricardo Wurmus

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