From mboxrd@z Thu Jan 1 00:00:00 1970 From: Pjotr Prins Subject: [PATCH] gnu: Add r-qtl. Date: Thu, 17 Sep 2015 16:18:31 +0200 Message-ID: <55facbb7.XMIzNX9aIy6n26s1%pjotr.public12@thebird.nl> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:46664) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Zca3D-0000Oe-Kw for guix-devel@gnu.org; Thu, 17 Sep 2015 10:20:45 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1Zca39-00025a-Hz for guix-devel@gnu.org; Thu, 17 Sep 2015 10:20:39 -0400 Received: from mail.thebird.nl ([95.154.246.10]:32941) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Zca38-00025P-PF for guix-devel@gnu.org; Thu, 17 Sep 2015 10:20:35 -0400 List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-qtl): New variable. --- gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a13fd7a..cc6a418 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -28,6 +28,7 @@ #:use-module (guix build-system perl) #:use-module (guix build-system python) #:use-module (guix build-system ruby) + #:use-module (guix build-system r) #:use-module (guix build-system trivial) #:use-module (gnu packages) #:use-module (gnu packages algebra) @@ -2700,3 +2701,24 @@ position for indels. Bio-locus allows users to store this chr+pos or chr+pos+alt information in a database.") (home-page "https://github.com/pjotrp/bio-locus") (license license:expat))) + +(define-public r-qtl + (package + (name "r-qtl") + (version "1.37-11") + (source + (origin + (method url-fetch) + (uri (string-append + "mirror://cran/src/contrib/qtl_" + version ".tar.gz")) + (sha256 + (base32 + "0h20d36mww7ljp51pfs66xq33yq4b4fwq9nsh02dpmfhlaxgx1xi")))) + (build-system r-build-system) + (home-page "http://www.rqtl.org") + (synopsis "Tools for Analyzing QTL Experiments") + (description "Bio-statistics library for analysis of experimental +crosses to identify genes (called quantitative trait loci, QTLs) +contributing to variation in quantitative traits.") + (license license:gpl3+))) -- 2.4.3