* Re: 01/02: gnu: blast+: Update to 2.6.0. [not found] ` <20170704100852.2E1DB20DF8@vcs0.savannah.gnu.org> @ 2017-07-06 16:54 ` Ludovic Courtès 2017-07-06 23:33 ` Ben Woodcroft 0 siblings, 1 reply; 4+ messages in thread From: Ludovic Courtès @ 2017-07-06 16:54 UTC (permalink / raw) To: Ben Woodcroft; +Cc: guix-devel Hi Ben, donttrustben@gmail.com (Ben Woodcroft) skribis: > commit 18dea67dc3a42d782b34b551304748346f173184 > Author: Ben Woodcroft <donttrustben@gmail.com> > Date: Mon Jul 3 23:00:14 2017 +1000 > > gnu: blast+: Update to 2.6.0. > > * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. > [origin]: Remove bundled pcre. > [arguments]: Replace paths in run_with_lock.c. Configure with pcre. > [inputs]: Add pcre, perl, python. [...] > + (patches (search-patches "blast+-fix-makefile.patch")) You forgot this patch in the commit. Could you please commit it? We may have to revert it because it’s currently blocking evaluations on hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>. TIA! Ludo’. ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: 01/02: gnu: blast+: Update to 2.6.0. 2017-07-06 16:54 ` 01/02: gnu: blast+: Update to 2.6.0 Ludovic Courtès @ 2017-07-06 23:33 ` Ben Woodcroft 2017-07-06 23:39 ` Leo Famulari 0 siblings, 1 reply; 4+ messages in thread From: Ben Woodcroft @ 2017-07-06 23:33 UTC (permalink / raw) To: Ludovic Courtès; +Cc: guix-devel Hi Ludo, On 07/07/17 02:54, Ludovic Courtès wrote: > Hi Ben, > > donttrustben@gmail.com (Ben Woodcroft) skribis: > >> commit 18dea67dc3a42d782b34b551304748346f173184 >> Author: Ben Woodcroft <donttrustben@gmail.com> >> Date: Mon Jul 3 23:00:14 2017 +1000 >> >> gnu: blast+: Update to 2.6.0. >> >> * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. >> [origin]: Remove bundled pcre. >> [arguments]: Replace paths in run_with_lock.c. Configure with pcre. >> [inputs]: Add pcre, perl, python. > [...] > >> + (patches (search-patches "blast+-fix-makefile.patch")) > You forgot this patch in the commit. Could you please commit it? > > We may have to revert it because it’s currently blocking evaluations on > hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>. Gah, apologies. I will fix this in ~12 hours time. Anyone should feel free to revert it in the meantime as I am unable to until then. ben ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: 01/02: gnu: blast+: Update to 2.6.0. 2017-07-06 23:33 ` Ben Woodcroft @ 2017-07-06 23:39 ` Leo Famulari 2017-07-08 4:14 ` Ben Woodcroft 0 siblings, 1 reply; 4+ messages in thread From: Leo Famulari @ 2017-07-06 23:39 UTC (permalink / raw) To: Ben Woodcroft; +Cc: guix-devel [-- Attachment #1: Type: text/plain, Size: 1161 bytes --] On Fri, Jul 07, 2017 at 09:33:26AM +1000, Ben Woodcroft wrote: > Hi Ludo, > > > On 07/07/17 02:54, Ludovic Courtès wrote: > > Hi Ben, > > > > donttrustben@gmail.com (Ben Woodcroft) skribis: > > > > > commit 18dea67dc3a42d782b34b551304748346f173184 > > > Author: Ben Woodcroft <donttrustben@gmail.com> > > > Date: Mon Jul 3 23:00:14 2017 +1000 > > > > > > gnu: blast+: Update to 2.6.0. > > > * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. > > > [origin]: Remove bundled pcre. > > > [arguments]: Replace paths in run_with_lock.c. Configure with pcre. > > > [inputs]: Add pcre, perl, python. > > [...] > > > > > + (patches (search-patches "blast+-fix-makefile.patch")) > > You forgot this patch in the commit. Could you please commit it? > > > > We may have to revert it because it’s currently blocking evaluations on > > hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>. > Gah, apologies. I will fix this in ~12 hours time. Anyone should feel free > to revert it in the meantime as I am unable to until then. > ben I reverted it in the meantime. [-- Attachment #2: signature.asc --] [-- Type: application/pgp-signature, Size: 833 bytes --] ^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: 01/02: gnu: blast+: Update to 2.6.0. 2017-07-06 23:39 ` Leo Famulari @ 2017-07-08 4:14 ` Ben Woodcroft 0 siblings, 0 replies; 4+ messages in thread From: Ben Woodcroft @ 2017-07-08 4:14 UTC (permalink / raw) To: Leo Famulari; +Cc: guix-devel On 07/07/17 09:39, Leo Famulari wrote: > On Fri, Jul 07, 2017 at 09:33:26AM +1000, Ben Woodcroft wrote: >> Hi Ludo, >> >> >> On 07/07/17 02:54, Ludovic Courtès wrote: >>> Hi Ben, >>> >>> donttrustben@gmail.com (Ben Woodcroft) skribis: >>> >>>> commit 18dea67dc3a42d782b34b551304748346f173184 >>>> Author: Ben Woodcroft <donttrustben@gmail.com> >>>> Date: Mon Jul 3 23:00:14 2017 +1000 >>>> >>>> gnu: blast+: Update to 2.6.0. >>>> * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0. >>>> [origin]: Remove bundled pcre. >>>> [arguments]: Replace paths in run_with_lock.c. Configure with pcre. >>>> [inputs]: Add pcre, perl, python. >>> [...] >>> >>>> + (patches (search-patches "blast+-fix-makefile.patch")) >>> You forgot this patch in the commit. Could you please commit it? >>> >>> We may have to revert it because it’s currently blocking evaluations on >>> hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>. >> Gah, apologies. I will fix this in ~12 hours time. Anyone should feel free >> to revert it in the meantime as I am unable to until then. >> ben > I reverted it in the meantime. Thanks Leo. I've just pushed an updated commit 4732e6ee84fea4e58b8a62cad054b10966f4f6e6 with the patch. ben ^ permalink raw reply [flat|nested] 4+ messages in thread
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[not found] <20170704100851.17544.53007@vcs0.savannah.gnu.org>
[not found] ` <20170704100852.2E1DB20DF8@vcs0.savannah.gnu.org>
2017-07-06 16:54 ` 01/02: gnu: blast+: Update to 2.6.0 Ludovic Courtès
2017-07-06 23:33 ` Ben Woodcroft
2017-07-06 23:39 ` Leo Famulari
2017-07-08 4:14 ` Ben Woodcroft
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