* Re: 01/02: gnu: blast+: Update to 2.6.0.
[not found] ` <20170704100852.2E1DB20DF8@vcs0.savannah.gnu.org>
@ 2017-07-06 16:54 ` Ludovic Courtès
2017-07-06 23:33 ` Ben Woodcroft
0 siblings, 1 reply; 4+ messages in thread
From: Ludovic Courtès @ 2017-07-06 16:54 UTC (permalink / raw)
To: Ben Woodcroft; +Cc: guix-devel
Hi Ben,
donttrustben@gmail.com (Ben Woodcroft) skribis:
> commit 18dea67dc3a42d782b34b551304748346f173184
> Author: Ben Woodcroft <donttrustben@gmail.com>
> Date: Mon Jul 3 23:00:14 2017 +1000
>
> gnu: blast+: Update to 2.6.0.
>
> * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
> [origin]: Remove bundled pcre.
> [arguments]: Replace paths in run_with_lock.c. Configure with pcre.
> [inputs]: Add pcre, perl, python.
[...]
> + (patches (search-patches "blast+-fix-makefile.patch"))
You forgot this patch in the commit. Could you please commit it?
We may have to revert it because it’s currently blocking evaluations on
hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>.
TIA!
Ludo’.
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: 01/02: gnu: blast+: Update to 2.6.0.
2017-07-06 16:54 ` 01/02: gnu: blast+: Update to 2.6.0 Ludovic Courtès
@ 2017-07-06 23:33 ` Ben Woodcroft
2017-07-06 23:39 ` Leo Famulari
0 siblings, 1 reply; 4+ messages in thread
From: Ben Woodcroft @ 2017-07-06 23:33 UTC (permalink / raw)
To: Ludovic Courtès; +Cc: guix-devel
Hi Ludo,
On 07/07/17 02:54, Ludovic Courtès wrote:
> Hi Ben,
>
> donttrustben@gmail.com (Ben Woodcroft) skribis:
>
>> commit 18dea67dc3a42d782b34b551304748346f173184
>> Author: Ben Woodcroft <donttrustben@gmail.com>
>> Date: Mon Jul 3 23:00:14 2017 +1000
>>
>> gnu: blast+: Update to 2.6.0.
>>
>> * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
>> [origin]: Remove bundled pcre.
>> [arguments]: Replace paths in run_with_lock.c. Configure with pcre.
>> [inputs]: Add pcre, perl, python.
> [...]
>
>> + (patches (search-patches "blast+-fix-makefile.patch"))
> You forgot this patch in the commit. Could you please commit it?
>
> We may have to revert it because it’s currently blocking evaluations on
> hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>.
Gah, apologies. I will fix this in ~12 hours time. Anyone should feel
free to revert it in the meantime as I am unable to until then.
ben
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: 01/02: gnu: blast+: Update to 2.6.0.
2017-07-06 23:33 ` Ben Woodcroft
@ 2017-07-06 23:39 ` Leo Famulari
2017-07-08 4:14 ` Ben Woodcroft
0 siblings, 1 reply; 4+ messages in thread
From: Leo Famulari @ 2017-07-06 23:39 UTC (permalink / raw)
To: Ben Woodcroft; +Cc: guix-devel
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On Fri, Jul 07, 2017 at 09:33:26AM +1000, Ben Woodcroft wrote:
> Hi Ludo,
>
>
> On 07/07/17 02:54, Ludovic Courtès wrote:
> > Hi Ben,
> >
> > donttrustben@gmail.com (Ben Woodcroft) skribis:
> >
> > > commit 18dea67dc3a42d782b34b551304748346f173184
> > > Author: Ben Woodcroft <donttrustben@gmail.com>
> > > Date: Mon Jul 3 23:00:14 2017 +1000
> > >
> > > gnu: blast+: Update to 2.6.0.
> > > * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
> > > [origin]: Remove bundled pcre.
> > > [arguments]: Replace paths in run_with_lock.c. Configure with pcre.
> > > [inputs]: Add pcre, perl, python.
> > [...]
> >
> > > + (patches (search-patches "blast+-fix-makefile.patch"))
> > You forgot this patch in the commit. Could you please commit it?
> >
> > We may have to revert it because it’s currently blocking evaluations on
> > hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>.
> Gah, apologies. I will fix this in ~12 hours time. Anyone should feel free
> to revert it in the meantime as I am unable to until then.
> ben
I reverted it in the meantime.
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^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: 01/02: gnu: blast+: Update to 2.6.0.
2017-07-06 23:39 ` Leo Famulari
@ 2017-07-08 4:14 ` Ben Woodcroft
0 siblings, 0 replies; 4+ messages in thread
From: Ben Woodcroft @ 2017-07-08 4:14 UTC (permalink / raw)
To: Leo Famulari; +Cc: guix-devel
On 07/07/17 09:39, Leo Famulari wrote:
> On Fri, Jul 07, 2017 at 09:33:26AM +1000, Ben Woodcroft wrote:
>> Hi Ludo,
>>
>>
>> On 07/07/17 02:54, Ludovic Courtès wrote:
>>> Hi Ben,
>>>
>>> donttrustben@gmail.com (Ben Woodcroft) skribis:
>>>
>>>> commit 18dea67dc3a42d782b34b551304748346f173184
>>>> Author: Ben Woodcroft <donttrustben@gmail.com>
>>>> Date: Mon Jul 3 23:00:14 2017 +1000
>>>>
>>>> gnu: blast+: Update to 2.6.0.
>>>> * gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
>>>> [origin]: Remove bundled pcre.
>>>> [arguments]: Replace paths in run_with_lock.c. Configure with pcre.
>>>> [inputs]: Add pcre, perl, python.
>>> [...]
>>>
>>>> + (patches (search-patches "blast+-fix-makefile.patch"))
>>> You forgot this patch in the commit. Could you please commit it?
>>>
>>> We may have to revert it because it’s currently blocking evaluations on
>>> hydra.gnu.org: <https://hydra.gnu.org/jobset/gnu/master#tabs-errors>.
>> Gah, apologies. I will fix this in ~12 hours time. Anyone should feel free
>> to revert it in the meantime as I am unable to until then.
>> ben
> I reverted it in the meantime.
Thanks Leo. I've just pushed an updated commit
4732e6ee84fea4e58b8a62cad054b10966f4f6e6 with the patch.
ben
^ permalink raw reply [flat|nested] 4+ messages in thread
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[not found] <20170704100851.17544.53007@vcs0.savannah.gnu.org>
[not found] ` <20170704100852.2E1DB20DF8@vcs0.savannah.gnu.org>
2017-07-06 16:54 ` 01/02: gnu: blast+: Update to 2.6.0 Ludovic Courtès
2017-07-06 23:33 ` Ben Woodcroft
2017-07-06 23:39 ` Leo Famulari
2017-07-08 4:14 ` Ben Woodcroft
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