From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ben Woodcroft Subject: Re: [PATCH] gnu: bedtools: Update to 2.24.0. Date: Sat, 25 Jul 2015 13:32:18 +1000 Message-ID: <55B30342.7070906@uq.edu.au> References: <55B254A6.3050403@uq.edu.au> Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8; format=flowed Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:37301) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZIqCK-0000Te-NT for guix-devel@gnu.org; Fri, 24 Jul 2015 23:32:29 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZIqCH-0007X8-I8 for guix-devel@gnu.org; Fri, 24 Jul 2015 23:32:28 -0400 Received: from mailhub2.soe.uq.edu.au ([130.102.132.209]:33430 helo=newmailhub.uq.edu.au) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZIqCG-0007Ws-W5 for guix-devel@gnu.org; Fri, 24 Jul 2015 23:32:25 -0400 In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: Ricardo Wurmus Cc: "guix-devel@gnu.org" On 25/07/15 01:11, Ricardo Wurmus wrote: > Ben Woodcroft writes: > >> There was some discussion of this on the bio-packaging list re changes >> in usage with Ricardo, but I think it breaks any dependent packages. >> http://lists.open-bio.org/pipermail/bio-packaging/2015-July/000113.htm= l > Did you mean =E2=80=9CI *don=E2=80=99t* think it breaks any dependent p= ackages=E2=80=9D? > Because that=E2=80=99s what I think :) Yeh sorry was half asleep watching Le Tour. > Only =E2=80=98pybedtools=E2=80=99 uses the =E2=80=98bedtools=E2=80=99 p= ackage, and only =E2=80=98clipper=E2=80=99 uses > =E2=80=98pybedtools=E2=80=99. =E2=80=98pybedtools=E2=80=99 is unlikely= to be affected by a change in > command line behaviour. I built these two packages locally without incident. ben