From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms11 with LMTPS id oD7jBl3Ot1/UNwAA0tVLHw (envelope-from ) for ; Fri, 20 Nov 2020 14:10:37 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id gM7WAl3Ot18FJwAA1q6Kng (envelope-from ) for ; Fri, 20 Nov 2020 14:10:37 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id D5FC4940363 for ; Fri, 20 Nov 2020 14:10:36 +0000 (UTC) Received: from localhost ([::1]:47676 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kg77T-00085t-LY for larch@yhetil.org; Fri, 20 Nov 2020 09:10:35 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:48382) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1kg77C-00085i-N4 for guix-devel@gnu.org; Fri, 20 Nov 2020 09:10:19 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]:33140) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1kg77A-0008K9-JC; Fri, 20 Nov 2020 09:10:17 -0500 Received: from [143.121.239.14] (port=19000 helo=[10.132.152.6]) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1kg779-0004pK-Gx; Fri, 20 Nov 2020 09:10:16 -0500 Message-ID: <2b03f8375973e6729327c721eb6a653f2313f7ed.camel@gnu.org> Subject: Re: Updating to latest Bioconductor release From: Roel Janssen To: Ricardo Wurmus Date: Fri, 20 Nov 2020 15:10:13 +0100 In-Reply-To: <87wnyg9mc3.fsf@elephly.net> References: <86tutnmvyn.fsf@gmail.com> <63ad286432442f3c6c22acf60b50632d1a4d4b8d.camel@gnu.org> <0f3a95cbcbefec60a9a239f39eefa7a991272dc9.camel@gnu.org> <873615aw3m.fsf@elephly.net> <63ba88365933ab9878eaa040ee4190ffdebbc41a.camel@gnu.org> <87zh3c9mgh.fsf@elephly.net> <87wnyg9mc3.fsf@elephly.net> Content-Type: text/plain; charset="UTF-8" User-Agent: Evolution 3.38.1 (3.38.1-1.fc33) MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Guix Devel Errors-To: guix-devel-bounces+larch=yhetil.org@gnu.org Sender: "Guix-devel" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of guix-devel-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=guix-devel-bounces@gnu.org X-Spam-Score: -1.51 X-TUID: ut4mD+anW1KJ On Fri, 2020-11-20 at 14:42 +0100, Ricardo Wurmus wrote: > > Ricardo Wurmus writes: > > > There are some open questions: the changes to r-mutationalpatterns > > invalidate the comment > > > >    ;; These two packages are suggested packages > > > > above r-bsgenome-hsapiens-1000genomes-hs37d5 and > > r-bsgenome-hsapiens-ucsc-hg19.  Would be good to adjust the comment or > > to move it down. > > > > I also saw that r-rsubread fails to build. > > And one more: > > The commit that updates %bioconductor-version (“import: cran: Update the > Bioconductor version to 3.12.”) should also change “bioconductor-uri” in > (guix build-system r).  This is still at 3.11. > Can/may I rewrite the history of my own commits to fix these? Kind regards, Roel Janssen