Compilation failure on very large module

Compilation failure on very large module

[Ricardo Wurmus]

Hi,

I have a very large Guix module with almost all packages from CRAN.
Unfortunately, I cannot compile it.  Guile 2.2.2 runs out of memory and
even Guile 2.0 crashes with “list too long”.

Here’s what I did:

    guix environment --pure --ad-hoc guile@2.0
    guix environment --pure --ad-hoc guile@2.0

-- 
  Ricardo Wurmus
  
  System administrator
  BIMSB - Scientific Bioinformatics Platform
  Max Delbrueck Center for Molecular Medicine
  
  Robert-Rössle-Str. 10, 13125, Berlin, Germany
  Building 89, Room 1.08
  
  email: ricardo.wurmus@mdc-berlin.de
  tel:   +49 30 9406 1796

Re: Compilation failure on very large module

[Ricardo Wurmus]

Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> writes:

> I have a very large Guix module with almost all packages from CRAN.
> Unfortunately, I cannot compile it.  Guile 2.2.2 runs out of memory and
> even Guile 2.0 crashes with “list too long”.

Here’s the crash with Guile 2.2.  I’ve added the module to the list of
modules that should be compiled and ran “make”.  You can see that there
are a couple of undefined variables, but I don’t think this should lead
to a crash.

--8<---------------cut here---------------start------------->8---
make
 cd . && /bin/sh /home/rwurmus/code/guix/build-aux/missing automake-1.15 --gnu Makefile
configure.ac:23: warning: The 'AM_PROG_MKDIR_P' macro is deprecated, and its use is discouraged.
configure.ac:23: You should use the Autoconf-provided 'AC_PROG_MKDIR_P' macro instead,
configure.ac:23: and use '$(MKDIR_P)' instead of '$(mkdir_p)'in your Makefile.am files.
Makefile.am:488: warning: AM_GNU_GETTEXT used but 'po' not in SUBDIRS
 cd . && /bin/sh ./config.status Makefile depfiles
config.status: creating Makefile
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory '/home/rwurmus/code/guix'
Making all in po/guix
make[2]: Entering directory '/home/rwurmus/code/guix/po/guix'
make[2]: Leaving directory '/home/rwurmus/code/guix/po/guix'
Making all in po/packages
make[2]: Entering directory '/home/rwurmus/code/guix/po/packages'
make[2]: Leaving directory '/home/rwurmus/code/guix/po/packages'
make[2]: Entering directory '/home/rwurmus/code/guix'
Compiling Scheme modules...
  LOAD     (gnu packages cran)
;;; note: source file ./gnu/packages/tex.scm
;;;       newer than compiled /home/rwurmus/code/guix/gnu/packages/tex.go
WARNING: (gnu packages cran): `expat' imported from both (guix licenses) and (gnu packages xml)
WARNING: (gnu packages cran): `expat' imported from both (gnu packages xml) and (guix licenses)
  LOAD     (gnu packages tex)
  GUILEC   gnu/packages/cran.go
  GUILEC   gnu/packages/tex.go
WARNING: (gnu packages cran): `expat' imported from both (guix licenses) and (gnu packages xml)
WARNING: (gnu packages cran): `expat' imported from both (gnu packages xml) and (guix licenses)
gnu/packages/cran.scm:650:12: warning: possibly unbound variable `zenity'
gnu/packages/cran.scm:708:12: warning: possibly unbound variable `libjpeg'
gnu/packages/cran.scm:727:12: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:889:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:4029:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:5112:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:5112:6: warning: possibly unbound variable `r-suprahex'
gnu/packages/cran.scm:5139:6: warning: possibly unbound variable `r-suprahex'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `atk'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `cairo'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `glib'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:5884:6: warning: possibly unbound variable `pango'
gnu/packages/cran.scm:5889:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:5909:12: warning: possibly unbound variable `cairo'
gnu/packages/cran.scm:5910:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:5955:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:8239:6: warning: possibly unbound variable `mariadb'
gnu/packages/cran.scm:8239:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:8243:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:8690:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:8714:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:9572:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:9726:23: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:10456:12: warning: possibly unbound variable `libwebp'
gnu/packages/cran.scm:10457:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:11519:12: warning: possibly unbound variable `svmlight'
gnu/packages/cran.scm:11723:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:11724:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:11825:12: warning: possibly unbound variable `libsndfile'
gnu/packages/cran.scm:12544:12: warning: possibly unbound variable `gtk-pandoc'
gnu/packages/cran.scm:12670:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:13459:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:14840:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:16300:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:18982:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:22472:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:23444:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:23958:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:25927:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26146:6: warning: possibly unbound variable `exiftool'
gnu/packages/cran.scm:26146:6: warning: possibly unbound variable `libav'
gnu/packages/cran.scm:26300:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26324:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26614:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:26777:6: warning: possibly unbound variable `r-qpgraph'
gnu/packages/cran.scm:27669:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:30654:12: warning: possibly unbound variable `exiftool'
gnu/packages/cran.scm:30939:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:31196:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:31218:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:31690:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:32063:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:32361:12: warning: possibly unbound variable `tensorflow'
gnu/packages/cran.scm:32604:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:33227:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:33378:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:33430:6: warning: possibly unbound variable `r-cntools'
gnu/packages/cran.scm:33948:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:34851:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:34851:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:34854:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:34984:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:35343:6: warning: possibly unbound variable `r-chopsticks'
gnu/packages/cran.scm:35690:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:35693:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:35909:12: warning: possibly unbound variable `git'
gnu/packages/cran.scm:35909:12: warning: possibly unbound variable `svn'
gnu/packages/cran.scm:36323:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:36593:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:36613:23: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:37493:6: warning: possibly unbound variable `r-survcomp'
gnu/packages/cran.scm:38562:6: warning: possibly unbound variable `r-fabia'
gnu/packages/cran.scm:39699:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:39772:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:39801:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:39922:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `atk'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `cairo'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `glib'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:42683:6: warning: possibly unbound variable `pango'
gnu/packages/cran.scm:42689:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:42714:12: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:42716:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:43376:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:43935:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:45315:12: warning: possibly unbound variable `mpi'
gnu/packages/cran.scm:45364:6: warning: possibly unbound variable `r-cma'
gnu/packages/cran.scm:45576:12: warning: possibly unbound variable `ffmpeg'
gnu/packages/cran.scm:45694:23: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:46975:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:47344:6: warning: possibly unbound variable `r-mait'
gnu/packages/cran.scm:47344:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:47651:6: warning: possibly unbound variable `r-massspecwavelet'
gnu/packages/cran.scm:48858:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:48862:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:50057:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:51891:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:52289:12: warning: possibly unbound variable `libsodium'
gnu/packages/cran.scm:52290:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:52654:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:52654:12: warning: possibly unbound variable `mpfr'
gnu/packages/cran.scm:52773:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:52919:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:54187:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:54830:23: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:55584:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:56311:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:56814:6: warning: possibly unbound variable `r-qpgraph'
gnu/packages/cran.scm:57595:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:58251:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:58251:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:58251:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:58258:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:59103:6: warning: possibly unbound variable `none'
gnu/packages/cran.scm:59103:6: warning: possibly unbound variable `openbugs'
gnu/packages/cran.scm:59103:6: warning: possibly unbound variable `winbugs'
gnu/packages/cran.scm:59699:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:60371:6: warning: possibly unbound variable `r-copynumber'
gnu/packages/cran.scm:60617:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:60639:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:60688:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:60688:6: warning: possibly unbound variable `r-widgettools'
gnu/packages/cran.scm:61293:12: warning: possibly unbound variable `libtiff'
gnu/packages/cran.scm:61293:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:61314:12: warning: possibly unbound variable `libtiff'
gnu/packages/cran.scm:61934:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:63700:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:64430:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:64859:6: warning: possibly unbound variable `libjpeg'
gnu/packages/cran.scm:64859:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:65500:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:67559:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:67579:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:67580:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:68270:12: warning: possibly unbound variable `ghostscript'
gnu/packages/cran.scm:68459:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:68487:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:68975:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:69514:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:70569:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:70631:12: warning: possibly unbound variable `librsvg2'
gnu/packages/cran.scm:70632:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:70701:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:71092:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:71190:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:71547:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:71809:6: warning: possibly unbound variable `r-survcomp'
gnu/packages/cran.scm:71902:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:72613:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:72702:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:73249:12: warning: possibly unbound variable `qgis'
gnu/packages/cran.scm:73280:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:73306:6: warning: possibly unbound variable `arcgis'
gnu/packages/cran.scm:73306:6: warning: possibly unbound variable `windows'
gnu/packages/cran.scm:73500:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:73822:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:74155:12: warning: possibly unbound variable `libpq'
gnu/packages/cran.scm:74161:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:75887:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:76026:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:76454:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:77188:6: warning: possibly unbound variable `r-beadarray'
gnu/packages/cran.scm:77724:12: warning: possibly unbound variable `netlogo'
gnu/packages/cran.scm:78486:12: warning: possibly unbound variable `mongodb'
gnu/packages/cran.scm:78730:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:79053:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:79372:6: warning: possibly unbound variable `libreoffice'
gnu/packages/cran.scm:79372:6: warning: possibly unbound variable `python-uno'
gnu/packages/cran.scm:79731:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:80147:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:80149:6: warning: possibly unbound variable `r-chopsticks'
gnu/packages/cran.scm:80288:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `img'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `libjpeg'
gnu/packages/cran.scm:80615:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:83631:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:84652:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:84729:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:84731:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:85006:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:86166:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:86257:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:86321:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:86341:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:87948:12: warning: possibly unbound variable `doxygen'
gnu/packages/cran.scm:88868:12: warning: possibly unbound variable `glib2'
gnu/packages/cran.scm:88868:12: warning: possibly unbound variable `pcre'
gnu/packages/cran.scm:88870:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:89009:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:89282:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:91088:23: warning: possibly unbound variable `r-fabia'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-bicare'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-fabia'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-ibbig'
gnu/packages/cran.scm:91136:6: warning: possibly unbound variable `r-rqubic'
gnu/packages/cran.scm:91295:23: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:92367:6: warning: possibly unbound variable `r-chemminer'
gnu/packages/cran.scm:92367:6: warning: possibly unbound variable `r-fmcsr'
gnu/packages/cran.scm:92367:6: warning: possibly unbound variable `r-keggrest'
gnu/packages/cran.scm:92395:12: warning: possibly unbound variable `libbi'
gnu/packages/cran.scm:92610:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:93225:6: warning: possibly unbound variable `libapparmor-dev'
gnu/packages/cran.scm:93225:6: warning: possibly unbound variable `linux'
gnu/packages/cran.scm:93227:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:94613:6: warning: possibly unbound variable `r-marray'
gnu/packages/cran.scm:95446:6: warning: possibly unbound variable `libpng'
gnu/packages/cran.scm:95446:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:95446:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:95451:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:95493:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:95546:12: warning: possibly unbound variable `openbugs'
gnu/packages/cran.scm:95569:12: warning: possibly unbound variable `mlwin'
gnu/packages/cran.scm:96052:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:97027:12: warning: possibly unbound variable `cmake'
gnu/packages/cran.scm:97330:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:97530:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:99950:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:100579:12: warning: possibly unbound variable `ncbi-blast+'
gnu/packages/cran.scm:100646:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:101657:12: warning: possibly unbound variable `mrtswath'
gnu/packages/cran.scm:101701:23: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:102235:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:102321:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:103014:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:103469:6: warning: possibly unbound variable `r-gosemsim'
gnu/packages/cran.scm:103928:12: warning: possibly unbound variable `openbugs'
gnu/packages/cran.scm:104586:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:105510:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:106303:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:106303:6: warning: possibly unbound variable `r-survcomp'
gnu/packages/cran.scm:107088:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:107184:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:107278:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:108300:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:108300:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:109103:6: warning: possibly unbound variable `r-lbe'
gnu/packages/cran.scm:109544:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:110548:12: warning: possibly unbound variable `ghostscript'
gnu/packages/cran.scm:112268:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:112291:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:112480:6: warning: possibly unbound variable `r-safe'
gnu/packages/cran.scm:112679:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:112680:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:113397:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:114710:12: warning: possibly unbound variable `ghc-pandoc'
gnu/packages/cran.scm:119020:6: warning: possibly unbound variable `apparmor'
gnu/packages/cran.scm:119020:6: warning: possibly unbound variable `pandoc'
gnu/packages/cran.scm:119999:12: warning: possibly unbound variable `jri'
gnu/packages/cran.scm:120356:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:121238:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:121261:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:122061:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:124952:6: warning: possibly unbound variable `r-kegggraph'
gnu/packages/cran.scm:125515:6: warning: possibly unbound variable `r-minet'
gnu/packages/cran.scm:125922:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:126481:6: warning: possibly unbound variable `c++11'
gnu/packages/cran.scm:126481:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:126481:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:126666:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:126715:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:126759:6: warning: possibly unbound variable `pandoc'
gnu/packages/cran.scm:126759:6: warning: possibly unbound variable `pywin32'
gnu/packages/cran.scm:127525:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:127528:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:127732:23: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:130778:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:130805:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:131348:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:132613:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:133003:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:133025:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:133030:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:133051:12: warning: possibly unbound variable `monetdb'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `atk'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `curl'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `gdal'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `glib'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `gtk+'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `pango'
gnu/packages/cran.scm:133555:6: warning: possibly unbound variable `proj.4'
gnu/packages/cran.scm:133563:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:133936:12: warning: possibly unbound variable `mrtswath'
gnu/packages/cran.scm:134618:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:134618:6: warning: possibly unbound variable `r-gsva'
gnu/packages/cran.scm:135861:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:136688:6: warning: possibly unbound variable `r-globalancova'
gnu/packages/cran.scm:136688:6: warning: possibly unbound variable `r-globaltest'
gnu/packages/cran.scm:137369:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:137641:12: warning: possibly unbound variable `texlive'
gnu/packages/cran.scm:138639:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:138977:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:139961:6: warning: possibly unbound variable `r-geometadb'
gnu/packages/cran.scm:139961:6: warning: possibly unbound variable `r-geoquery'
gnu/packages/cran.scm:139961:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:140105:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:140105:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:140742:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:141422:6: warning: possibly unbound variable `#{'bwidget'}#'
gnu/packages/cran.scm:141422:6: warning: possibly unbound variable `#{'tktable'}#'
gnu/packages/cran.scm:141422:6: warning: possibly unbound variable `windows'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-beadarray'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-convert'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-geometadb'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-geoquery'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-globaltest'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-kegggraph'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-keggrest'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-lumi'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-marray'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-oligo'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-pdinfobuilder'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-simpleaffy'
gnu/packages/cran.scm:145045:6: warning: possibly unbound variable `r-ssize'
gnu/packages/cran.scm:145516:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:146228:6: warning: possibly unbound variable `r-icens'
gnu/packages/cran.scm:148988:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:149453:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:149870:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:150534:12: warning: possibly unbound variable `libxml2-devel'
gnu/packages/cran.scm:150535:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:151616:6: warning: possibly unbound variable `ij.jar'
gnu/packages/cran.scm:151616:6: warning: possibly unbound variable `imagej'
gnu/packages/cran.scm:151616:6: warning: possibly unbound variable `java'
gnu/packages/cran.scm:152739:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:153036:6: warning: possibly unbound variable `r-gosemsim'
gnu/packages/cran.scm:153532:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:154007:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:155176:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:155745:12: warning: possibly unbound variable `gmp'
gnu/packages/cran.scm:155795:6: warning: possibly unbound variable `r-kegggraph'
gnu/packages/cran.scm:156124:12: warning: possibly unbound variable `mongodb'
gnu/packages/cran.scm:157108:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:157176:6: warning: possibly unbound variable `r-lfa'
gnu/packages/cran.scm:157465:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:157554:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:159176:23: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:159757:6: warning: possibly unbound variable `r-rdisop'
gnu/packages/cran.scm:160147:6: warning: possibly unbound variable `r-a4core'
gnu/packages/cran.scm:160371:12: warning: possibly unbound variable `xpdf'
gnu/packages/cran.scm:161957:6: warning: possibly unbound variable `fftw3'
gnu/packages/cran.scm:161957:6: warning: possibly unbound variable `libtiff'
gnu/packages/cran.scm:161957:6: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:161971:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:162660:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:162684:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:164370:6: warning: possibly unbound variable `r-nem'
gnu/packages/cran.scm:164560:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:164727:12: warning: possibly unbound variable `openmp'
gnu/packages/cran.scm:164983:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:165386:6: warning: possibly unbound variable `r-genoset'
gnu/packages/cran.scm:165610:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:166183:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:166711:6: warning: possibly unbound variable `r-snpstats'
gnu/packages/cran.scm:168228:6: warning: possibly unbound variable `r-hitc'
gnu/packages/cran.scm:168509:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:169303:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:169654:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:169783:6: warning: possibly unbound variable `r-ggtree'
gnu/packages/cran.scm:170212:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:170430:6: warning: possibly unbound variable `r-gwidgets2'
gnu/packages/cran.scm:170741:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:171171:6: warning: possibly unbound variable `r-illuminaio'
gnu/packages/cran.scm:172374:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:173049:12: warning: possibly unbound variable `git'
gnu/packages/cran.scm:173049:12: warning: possibly unbound variable `svn'
gnu/packages/cran.scm:173074:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:173499:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:174496:12: warning: possibly unbound variable `gmt'
gnu/packages/cran.scm:174802:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:175813:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:176034:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:176082:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:177063:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:177381:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:177538:6: warning: possibly unbound variable `getopt::long'
gnu/packages/cran.scm:178514:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:178890:12: warning: possibly unbound variable `openmp'
gnu/packages/cran.scm:179197:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:180637:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:181768:6: warning: possibly unbound variable `r-keggrest'
gnu/packages/cran.scm:181921:6: warning: possibly unbound variable `difflib'
gnu/packages/cran.scm:181921:6: warning: possibly unbound variable `fuzzywuzzy'
gnu/packages/cran.scm:182640:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:182694:6: warning: possibly unbound variable `r-breastcancervdx'
gnu/packages/cran.scm:183747:12: warning: possibly unbound variable `freesurfer'
gnu/packages/cran.scm:184569:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:184976:12: warning: possibly unbound variable `opengl'
gnu/packages/cran.scm:184976:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:185698:6: warning: possibly unbound variable `r-flowcore'
gnu/packages/cran.scm:185698:6: warning: possibly unbound variable `r-flowworkspace'
gnu/packages/cran.scm:186415:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:187445:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:187559:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:190788:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:191101:6: warning: possibly unbound variable `r-gage'
gnu/packages/cran.scm:192335:6: warning: possibly unbound variable `r-gdsfmt'
gnu/packages/cran.scm:192335:6: warning: possibly unbound variable `r-snprelate'
gnu/packages/cran.scm:193352:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:194097:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:195585:6: warning: possibly unbound variable `r-gcrma'
gnu/packages/cran.scm:195585:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:195585:6: warning: possibly unbound variable `r-siggenes'
gnu/packages/cran.scm:195755:6: warning: possibly unbound variable `r-globaltest'
gnu/packages/cran.scm:195755:6: warning: possibly unbound variable `r-gsealm'
gnu/packages/cran.scm:195755:6: warning: possibly unbound variable `r-icheck'
gnu/packages/cran.scm:196132:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:199115:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:199976:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:200639:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:200662:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:201420:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:201672:12: warning: possibly unbound variable `domino'
gnu/packages/cran.scm:202443:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:202841:12: warning: possibly unbound variable `fftw'
gnu/packages/cran.scm:204525:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:204946:6: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:204946:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:205040:6: warning: possibly unbound variable `r-all'
gnu/packages/cran.scm:205040:6: warning: possibly unbound variable `r-mlinterfaces'
gnu/packages/cran.scm:205959:12: warning: possibly unbound variable `zlib'
gnu/packages/cran.scm:206368:6: warning: possibly unbound variable `r-affxparser'
gnu/packages/cran.scm:206368:6: warning: possibly unbound variable `r-oligo'
gnu/packages/cran.scm:206461:6: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:206667:12: warning: possibly unbound variable `jri'
gnu/packages/cran.scm:206717:12: warning: possibly unbound variable `jri'
gnu/packages/cran.scm:207380:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:207667:6: warning: possibly unbound variable `r-reder'
gnu/packages/cran.scm:207951:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:208571:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:208897:6: warning: possibly unbound variable `tktable'
gnu/packages/cran.scm:209322:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:210838:6: warning: possibly unbound variable `r-chopsticks'
gnu/packages/cran.scm:212358:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:212358:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:212930:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:213704:6: warning: possibly unbound variable `r-xcms'
gnu/packages/cran.scm:214806:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:215911:12: warning: possibly unbound variable `mysql'
gnu/packages/cran.scm:215913:6: warning: possibly unbound variable `r-geoquery'
gnu/packages/cran.scm:216974:6: warning: possibly unbound variable `java'
gnu/packages/cran.scm:216974:6: warning: possibly unbound variable `mysql'
gnu/packages/cran.scm:216974:6: warning: possibly unbound variable `plink2'
gnu/packages/cran.scm:218687:6: warning: possibly unbound variable `r-marray'
gnu/packages/cran.scm:219485:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:220679:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:220812:19: warning: possibly unbound variable `pkg-config'
gnu/packages/cran.scm:224078:6: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:224103:12: warning: possibly unbound variable `exiftool'
gnu/packages/cran.scm:225122:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:225480:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:227186:23: warning: possibly unbound variable `r-qvalue'
gnu/packages/cran.scm:228483:23: warning: possibly unbound variable `r-kernlab'
gnu/packages/cran.scm:228780:6: warning: possibly unbound variable `r-gosemsim'
gnu/packages/cran.scm:228927:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:229224:6: warning: possibly unbound variable `r-meigor'
gnu/packages/cran.scm:231929:12: warning: possibly unbound variable `ggobi'
gnu/packages/cran.scm:231958:6: warning: possibly unbound variable `r-beadarray'
gnu/packages/cran.scm:232207:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:233592:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:234112:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:234209:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:234857:6: warning: possibly unbound variable `r-affyplm'
gnu/packages/cran.scm:235067:12: warning: possibly unbound variable `jags'
gnu/packages/cran.scm:235095:23: warning: possibly unbound variable `r-rscala'
gnu/packages/cran.scm:235619:6: warning: possibly unbound variable `r-rdavidwebservice'
gnu/packages/cran.scm:236118:6: warning: possibly unbound variable `r-ebimage'
gnu/packages/cran.scm:237433:12: warning: possibly unbound variable `bwidget'
gnu/packages/cran.scm:237713:23: warning: possibly unbound variable `r-sagx'
gnu/packages/cran.scm:238175:6: warning: possibly unbound variable `r-datasets'
gnu/packages/cran.scm:238399:6: warning: possibly unbound variable `r-gwidgets'
gnu/packages/cran.scm:238694:6: warning: possibly unbound variable `r-multtest'
gnu/packages/cran.scm:238938:6: warning: possibly unbound variable `r-rgraphviz'
gnu/packages/cran.scm:242129:6: warning: possibly unbound variable `r-phyloseq'
gnu/packages/cran.scm:242756:6: warning: possibly unbound variable `r-datasets'
Too many heap sections: Increase MAXHINCR or MAX_HEAP_SECTS
/bin/sh: line 7: 12353 Aborted                 (core dumped) XDG_CACHE_HOME=/nowhere host=x86_64-unknown-linux-gnu srcdir="." ./pre-inst-env /gnu/store/2kgp5d4wh40b49gp4qwqh2b4il29gq6g-profile/bin/guile -L "." -L "." --no-auto-compile -s "."/build-aux/compile-all.scm guix/base16.scm guix/base32.scm guix/base64.scm guix/cpio.scm guix/records.scm guix/gcrypt.scm guix/hash.scm guix/pk-crypto.scm guix/pki.scm guix/combinators.scm guix/memoization.scm guix/utils.scm guix/sets.scm guix/modules.scm guix/download.scm guix/discovery.scm guix/git-download.scm guix/hg-download.scm guix/monads.scm guix/monad-repl.scm guix/gexp.scm guix/profiles.scm guix/serialization.scm guix/nar.scm guix/derivations.scm guix/grafts.scm guix/gnu-maintenance.scm guix/upstream.scm guix/licenses.scm guix/graph.scm guix/cache.scm guix/cve.scm guix/workers.scm guix/zlib.scm guix/build-system.scm guix/build-system/ant.scm guix/build-system/cargo.scm guix/build-system/cmake.scm guix/build-system/dub.scm guix/build-system/emacs.scm guix/build-system/asdf.scm guix/build-system/glib-or-gtk.scm guix/build-system/gnu.scm guix/build-system/haskell.scm guix/build-system/perl.scm guix/build-system/python.scm guix/build-system/ocaml.scm guix/build-system/waf.scm guix/build-system/r.scm guix/build-system/ruby.scm guix/build-system/trivial.scm guix/ftp-client.scm guix/http-client.scm guix/gnupg.scm guix/elf.scm guix/store.scm guix/cvs-download.scm guix/svn-download.scm guix/ui.scm guix/build/ant-build-system.scm guix/build/download.scm guix/build/cargo-build-system.scm guix/build/cmake-build-system.scm guix/build/dub-build-system.scm guix/build/emacs-build-system.scm guix/build/asdf-build-system.scm guix/build/git.scm guix/build/hg.scm guix/build/glib-or-gtk-build-system.scm guix/build/gnu-build-system.scm guix/build/gnu-dist.scm guix/build/perl-build-system.scm guix/build/python-build-system.scm guix/build/ocaml-build-system.scm guix/build/r-build-system.scm guix/build/ruby-build-system.scm guix/build/waf-build-system.scm guix/build/haskell-build-system.scm guix/build/store-copy.scm guix/build/utils.scm guix/build/union.scm guix/build/profiles.scm guix/build/pull.scm guix/build/rpath.scm guix/build/cvs.scm guix/build/svn.scm guix/build/syscalls.scm guix/build/gremlin.scm guix/build/emacs-utils.scm guix/build/java-utils.scm guix/build/lisp-utils.scm guix/build/graft.scm guix/build/bournish.scm guix/build/qt-utils.scm guix/build/make-bootstrap.scm guix/search-paths.scm guix/packages.scm guix/import/utils.scm guix/import/gnu.scm guix/import/snix.scm guix/import/cabal.scm guix/import/cran.scm guix/import/hackage.scm guix/import/elpa.scm guix/scripts.scm guix/scripts/download.scm guix/scripts/perform-download.scm guix/scripts/build.scm guix/scripts/archive.scm guix/scripts/import.scm guix/scripts/package.scm guix/scripts/gc.scm guix/scripts/hash.scm guix/scripts/pack.scm guix/scripts/pull.scm guix/scripts/substitute.scm guix/scripts/authenticate.scm guix/scripts/refresh.scm guix/scripts/system.scm guix/scripts/lint.scm guix/scripts/challenge.scm guix/scripts/import/cran.scm guix/scripts/import/gnu.scm guix/scripts/import/nix.scm guix/scripts/import/hackage.scm guix/scripts/import/elpa.scm guix/scripts/environment.scm guix/scripts/publish.scm guix/scripts/edit.scm guix/scripts/size.scm guix/scripts/graph.scm guix/scripts/container.scm guix/scripts/container/exec.scm guix.scm gnu.scm gnu/artwork.scm gnu/bootloader.scm gnu/bootloader/grub.scm gnu/bootloader/extlinux.scm gnu/packages.scm gnu/packages/abduco.scm gnu/packages/abiword.scm gnu/packages/acct.scm gnu/packages/acl.scm gnu/packages/admin.scm gnu/packages/adns.scm gnu/packages/algebra.scm gnu/packages/aidc.scm gnu/packages/android.scm gnu/packages/animation.scm gnu/packages/anthy.scm gnu/packages/apl.scm gnu/packages/apr.scm gnu/packages/aspell.scm gnu/packages/assembly.scm gnu/packages/astronomy.scm gnu/packages/attr.scm gnu/packages/audio.scm gnu/packages/augeas.scm gnu/packages/autogen.scm gnu/packages/autotools.scm gnu/packages/avahi.scm gnu/packages/avr.scm gnu/packages/backup.scm gnu/packages/base.scm gnu/packages/bash.scm gnu/packages/bdw-gc.scm gnu/packages/benchmark.scm gnu/packages/bioinformatics.scm gnu/packages/bittorrent.scm gnu/packages/bison.scm gnu/packages/boost.scm gnu/packages/bootloaders.scm gnu/packages/bootstrap.scm gnu/packages/build-tools.scm gnu/packages/busybox.scm gnu/packages/c.scm gnu/packages/calcurse.scm gnu/packages/ccache.scm gnu/packages/cdrom.scm gnu/packages/certs.scm gnu/packages/check.scm gnu/packages/chez.scm gnu/packages/ci.scm gnu/packages/cmake.scm gnu/packages/code.scm gnu/packages/commencement.scm gnu/packages/compression.scm gnu/packages/compton.scm gnu/packages/conkeror.scm gnu/packages/conky.scm gnu/packages/connman.scm gnu/packages/cook.scm gnu/packages/cpio.scm gnu/packages/cppi.scm gnu/packages/cran.scm gnu/packages/cross-base.scm gnu/packages/crypto.scm gnu/packages/cryptsetup.scm gnu/packages/cups.scm gnu/packages/curl.scm gnu/packages/cyrus-sasl.scm gnu/packages/databases.scm gnu/packages/datamash.scm gnu/packages/datastructures.scm gnu/packages/dav.scm gnu/packages/dc.scm gnu/packages/debug.scm gnu/packages/dejagnu.scm gnu/packages/dico.scm gnu/packages/dictionaries.scm gnu/packages/direct-connect.scm gnu/packages/disk.scm gnu/packages/display-managers.scm gnu/packages/django.scm gnu/packages/djvu.scm gnu/packages/dns.scm gnu/packages/docbook.scm gnu/packages/docker.scm gnu/packages/documentation.scm gnu/packages/dunst.scm gnu/packages/dvtm.scm gnu/packages/ebook.scm gnu/packages/ed.scm gnu/packages/education.scm gnu/packages/elf.scm gnu/packages/elixir.scm gnu/packages/embedded.scm gnu/packages/emacs.scm gnu/packages/enchant.scm gnu/packages/engineering.scm gnu/packages/enlightenment.scm gnu/packages/entr.scm gnu/packages/erlang.scm gnu/packages/fcitx.scm gnu/packages/figlet.scm gnu/packages/file.scm gnu/packages/file-systems.scm gnu/packages/finance.scm gnu/packages/firmware.scm gnu/packages/flashing-tools.scm gnu/packages/flex.scm gnu/packages/fltk.scm gnu/packages/fonts.scm gnu/packages/fontutils.scm gnu/packages/fpga.scm gnu/packages/freedesktop.scm gnu/packages/freeipmi.scm gnu/packages/ftp.scm gnu/packages/fribidi.scm gnu/packages/fvwm.scm gnu/packages/game-development.scm gnu/packages/games.scm gnu/packages/gawk.scm gnu/packages/gcal.scm gnu/packages/gcc.scm gnu/packages/gd.scm gnu/packages/gdb.scm gnu/packages/geo.scm gnu/packages/gettext.scm gnu/packages/gforth.scm gnu/packages/ghostscript.scm gnu/packages/gimp.scm gnu/packages/gkrellm.scm gnu/packages/gl.scm gnu/packages/glib.scm gnu/packages/gnome.scm gnu/packages/gnu-doc.scm gnu/packages/gnucash.scm gnu/packages/gnunet.scm gnu/packages/gnupg.scm gnu/packages/gnustep.scm gnu/packages/gnuzilla.scm gnu/packages/gnu-pw-mgr.scm gnu/packages/gobby.scm gnu/packages/golang.scm gnu/packages/gperf.scm gnu/packages/gprolog.scm gnu/packages/gps.scm gnu/packages/graphics.scm gnu/packages/graphviz.scm gnu/packages/groff.scm gnu/packages/gsasl.scm gnu/packages/gstreamer.scm gnu/packages/gtk.scm gnu/packages/guile.scm gnu/packages/guile-wm.scm gnu/packages/gv.scm gnu/packages/gxmessage.scm gnu/packages/haskell.scm gnu/packages/hexedit.scm gnu/packages/hugs.scm gnu/packages/hurd.scm gnu/packages/ibus.scm gnu/packages/icu4c.scm gnu/packages/idris.scm gnu/packages/idutils.scm gnu/packages/image.scm gnu/packages/image-processing.scm gnu/packages/image-viewers.scm gnu/packages/imagemagick.scm gnu/packages/indent.scm gnu/packages/inklingreader.scm gnu/packages/inkscape.scm gnu/packages/irc.scm gnu/packages/iso-codes.scm gnu/packages/java.scm gnu/packages/jemalloc.scm gnu/packages/jrnl.scm gnu/packages/julia.scm gnu/packages/kde.scm gnu/packages/kde-frameworks.scm gnu/packages/kerberos.scm gnu/packages/key-mon.scm gnu/packages/kodi.scm gnu/packages/language.scm gnu/packages/ldc.scm gnu/packages/lego.scm gnu/packages/less.scm gnu/packages/lesstif.scm gnu/packages/libbsd.scm gnu/packages/libcanberra.scm gnu/packages/libdaemon.scm gnu/packages/libedit.scm gnu/packages/libevent.scm gnu/packages/libffcall.scm gnu/packages/libffi.scm gnu/packages/libftdi.scm gnu/packages/calendar.scm gnu/packages/libidn.scm gnu/packages/libphidget.scm gnu/packages/libreoffice.scm gnu/packages/libsigsegv.scm gnu/packages/libunistring.scm gnu/packages/libusb.scm gnu/packages/libunwind.scm gnu/packages/libupnp.scm gnu/packages/lighting.scm gnu/packages/linux.scm gnu/packages/lirc.scm gnu/packages/lisp.scm gnu/packages/llvm.scm gnu/packages/lout.scm gnu/packages/logging.scm gnu/packages/lolcode.scm gnu/packages/lsof.scm gnu/packages/lua.scm gnu/packages/lxde.scm gnu/packages/lxqt.scm gnu/packages/m4.scm gnu/packages/machine-learning.scm gnu/packages/man.scm gnu/packages/mail.scm gnu/packages/make-bootstrap.scm gnu/packages/markdown.scm gnu/packages/marst.scm gnu/packages/mate.scm gnu/packages/maths.scm gnu/packages/mc.scm gnu/packages/mcrypt.scm gnu/packages/mes.scm gnu/packages/messaging.scm gnu/packages/mingw.scm gnu/packages/mg.scm gnu/packages/microcom.scm gnu/packages/moe.scm gnu/packages/monitoring.scm gnu/packages/mono.scm gnu/packages/moreutils.scm gnu/packages/mpd.scm gnu/packages/mp3.scm gnu/packages/mpi.scm gnu/packages/multiprecision.scm gnu/packages/music.scm gnu/packages/musl.scm gnu/packages/mtools.scm gnu/packages/nano.scm gnu/packages/ncdu.scm gnu/packages/ncurses.scm gnu/packages/netpbm.scm gnu/packages/nettle.scm gnu/packages/networking.scm gnu/packages/nfs.scm gnu/packages/nickle.scm gnu/packages/nim.scm gnu/packages/ninja.scm gnu/packages/node.scm gnu/packages/noweb.scm gnu/packages/ntp.scm gnu/packages/nutrition.scm gnu/packages/nvi.scm gnu/packages/ocaml.scm gnu/packages/ocr.scm gnu/packages/onc-rpc.scm gnu/packages/openbox.scm gnu/packages/openldap.scm gnu/packages/openstack.scm gnu/packages/orpheus.scm gnu/packages/ots.scm gnu/packages/package-management.scm gnu/packages/parallel.scm gnu/packages/password-utils.scm gnu/packages/patchutils.scm gnu/packages/pciutils.scm gnu/packages/pcre.scm gnu/packages/pdf.scm gnu/packages/pem.scm gnu/packages/perl.scm gnu/packages/perl-web.scm gnu/packages/photo.scm gnu/packages/php.scm gnu/packages/pkg-config.scm gnu/packages/plotutils.scm gnu/packages/polkit.scm gnu/packages/popt.scm gnu/packages/pth.scm gnu/packages/pulseaudio.scm gnu/packages/pumpio.scm gnu/packages/pretty-print.scm gnu/packages/protobuf.scm gnu/packages/pv.scm gnu/packages/python.scm gnu/packages/qemu.scm gnu/packages/qt.scm gnu/packages/ragel.scm gnu/packages/rails.scm gnu/packages/ratpoison.scm gnu/packages/rdesktop.scm gnu/packages/rdf.scm gnu/packages/re2c.scm gnu/packages/readline.scm gnu/packages/regex.scm gnu/packages/rrdtool.scm gnu/packages/rsync.scm gnu/packages/ruby.scm gnu/packages/rush.scm gnu/packages/rust.scm gnu/packages/samba.scm gnu/packages/sawfish.scm gnu/packages/scanner.scm gnu/packages/scheme.scm gnu/packages/screen.scm gnu/packages/scribus.scm gnu/packages/scsi.scm gnu/packages/sdcc.scm gnu/packages/sdl.scm gnu/packages/search.scm gnu/packages/security-token.scm gnu/packages/selinux.scm gnu/packages/serialization.scm gnu/packages/serveez.scm gnu/packages/shells.scm gnu/packages/shellutils.scm gnu/packages/simh.scm gnu/packages/skarnet.scm gnu/packages/skribilo.scm gnu/packages/slang.scm gnu/packages/smalltalk.scm gnu/packages/speech.scm gnu/packages/spice.scm gnu/packages/ssh.scm gnu/packages/sssd.scm gnu/packages/stalonetray.scm gnu/packages/statistics.scm gnu/packages/storage.scm gnu/packages/suckless.scm gnu/packages/swig.scm gnu/packages/sync.scm gnu/packages/synergy.scm gnu/packages/syndication.scm gnu/packages/task-management.scm gnu/packages/tbb.scm gnu/packages/tcl.scm gnu/packages/telephony.scm gnu/packages/terminals.scm gnu/packages/texinfo.scm gnu/packages/tex.scm gnu/packages/textutils.scm gnu/packages/text-editors.scm gnu/packages/time.scm gnu/packages/tls.scm gnu/packages/tmux.scm gnu/packages/tor.scm gnu/packages/tv.scm gnu/packages/uml.scm gnu/packages/unrtf.scm gnu/packages/upnp.scm gnu/packages/uucp.scm gnu/packages/valgrind.scm gnu/packages/version-control.scm gnu/packages/video.scm gnu/packages/vim.scm gnu/packages/vpn.scm gnu/packages/vtk.scm gnu/packages/w3m.scm gnu/packages/wdiff.scm gnu/packages/web.scm gnu/packages/web-browsers.scm gnu/packages/webkit.scm gnu/packages/wget.scm gnu/packages/wicd.scm gnu/packages/wine.scm gnu/packages/wm.scm gnu/packages/wordnet.scm gnu/packages/wv.scm gnu/packages/wxwidgets.scm gnu/packages/xfig.scm gnu/packages/xiph.scm gnu/packages/xml.scm gnu/packages/xnee.scm gnu/packages/xdisorg.scm gnu/packages/xorg.scm gnu/packages/xfce.scm gnu/packages/zile.scm gnu/packages/zip.scm gnu/services.scm gnu/services/admin.scm gnu/services/avahi.scm gnu/services/base.scm gnu/services/configuration.scm gnu/services/cuirass.scm gnu/services/cups.scm gnu/services/databases.scm gnu/services/dbus.scm gnu/services/desktop.scm gnu/services/dict.scm gnu/services/kerberos.scm gnu/services/lirc.scm gnu/services/mail.scm gnu/services/mcron.scm gnu/services/messaging.scm gnu/services/networking.scm gnu/services/nfs.scm gnu/services/shepherd.scm gnu/services/herd.scm gnu/services/pm.scm gnu/services/sddm.scm gnu/services/spice.scm gnu/services/ssh.scm gnu/services/version-control.scm gnu/services/vpn.scm gnu/services/web.scm gnu/services/xorg.scm gnu/system.scm gnu/system/file-systems.scm gnu/system/install.scm gnu/system/linux-container.scm gnu/system/linux-initrd.scm gnu/system/locale.scm gnu/system/mapped-devices.scm gnu/system/nss.scm gnu/system/pam.scm gnu/system/shadow.scm gnu/system/vm.scm gnu/build/activation.scm gnu/build/cross-toolchain.scm gnu/build/file-systems.scm gnu/build/install.scm gnu/build/linux-boot.scm gnu/build/linux-container.scm gnu/build/linux-initrd.scm gnu/build/linux-modules.scm gnu/build/marionette.scm gnu/build/shepherd.scm gnu/build/vm.scm gnu/tests.scm gnu/tests/base.scm gnu/tests/dict.scm gnu/tests/nfs.scm gnu/tests/install.scm gnu/tests/mail.scm gnu/tests/messaging.scm gnu/tests/networking.scm gnu/tests/ssh.scm gnu/tests/web.scm guix/docker.scm guix/import/cpan.scm guix/import/crate.scm guix/import/gem.scm guix/import/github.scm guix/import/json.scm guix/import/pypi.scm guix/import/stackage.scm guix/scripts/import/crate.scm guix/scripts/import/gem.scm guix/scripts/import/pypi.scm guix/scripts/import/stackage.scm guix/ssh.scm guix/scripts/copy.scm guix/store/ssh.scm guix/scripts/offload.scm guix/config.scm guix/tests.scm guix/tests/http.scm
make[2]: *** [Makefile:5167: make-go] Error 134
make[2]: Leaving directory '/home/rwurmus/code/guix'
make[1]: *** [Makefile:4294: all-recursive] Error 1
make[1]: Leaving directory '/home/rwurmus/code/guix'
make: *** [Makefile:2884: all] Error 2
--8<---------------cut here---------------end--------------->8---

-- 
Ricardo Wurmus

Re: Compilation failure on very large module

[Ludovic Courtès]

Hello,

Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> skribis:

> Here’s the crash with Guile 2.2.  I’ve added the module to the list of
> modules that should be compiled and ran “make”.  You can see that there
> are a couple of undefined variables, but I don’t think this should lead
> to a crash.

Looks like the same problem as outlined here:
<https://lists.gnu.org/archive/html/guile-devel/2017-05/msg00033.html>.

Basically the compiler’s memory consumption seems to be proportional to
the size of the input file, when I think it should be proportional to
the complexity of the most complex top-level expression given that Guile
doesn’t do inter-procedural analysis.

(The failure you get on 2.0 seems to be another story: apparently we’re
hitting a limitation somewhere in the object format.)

Ludo’.

Re: Compilation failure on very large module

[ng0]

[-- Attachment #1: Type: text/plain, Size: 1144 bytes --]

Ludovic Courtès transcribed 0.9K bytes:
> Hello,
> 
> Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> skribis:
> 
> > Here’s the crash with Guile 2.2.  I’ve added the module to the list of
> > modules that should be compiled and ran “make”.  You can see that there
> > are a couple of undefined variables, but I don’t think this should lead
> > to a crash.
> 
> Looks like the same problem as outlined here:
> <https://lists.gnu.org/archive/html/guile-devel/2017-05/msg00033.html>.
> 
> Basically the compiler’s memory consumption seems to be proportional to
> the size of the input file, when I think it should be proportional to
> the complexity of the most complex top-level expression given that Guile
> doesn’t do inter-procedural analysis.
> 
> (The failure you get on 2.0 seems to be another story: apparently we’re
> hitting a limitation somewhere in the object format.)
> 
> Ludo’.
> 
> 

It is no longterm fix, but how about splitting up the largest
modules we have in several reasonable sized modules?
-- 
ng0
OpenPG: A88C8ADD129828D7EAC02E52E22F9BBFEE348588
https://krosos.org/~/ng0/

[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 833 bytes --]