From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 07/16] gnu: Add r-maldiquant. Date: Tue, 17 Jan 2017 15:11:32 +0100 Message-ID: <20170117141141.11694-8-rekado@elephly.net> References: <20170117141141.11694-1-rekado@elephly.net> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:39833) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1cTUUo-0007E6-Dl for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:23 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1cTUUm-0006LY-Lb for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:22 -0500 Received: from sender163-mail.zoho.com ([74.201.84.163]:21110) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1cTUUm-0006KU-Cx for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:20 -0500 In-Reply-To: <20170117141141.11694-1-rekado@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-maldiquant): New variable. --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 743e8fdce..74948ec55 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8202,3 +8202,29 @@ solution for binary trait. The package rareMETALS2 offers improved features for analyzing gene-level association tests in meta-analyses for binary trait.") (license license:gpl3))) + +(define-public r-maldiquant + (package + (name "r-maldiquant") + (version "1.16") + (source + (origin + (method url-fetch) + (uri (cran-uri "MALDIquant" version)) + (sha256 + (base32 + "067xbmy10mpsvmv77g62chd7wwhdhcfn5hmp5fisbnz2h5rq0q60")))) + (properties `((upstream-name . "MALDIquant"))) + (build-system r-build-system) + (home-page "http://cran.r-project.org/web/packages/MALDIquant") + (synopsis "Quantitative analysis of mass spectrometry data") + (description + "This package provides a complete analysis pipeline for matrix-assisted +laser desorption/ionization-time-of-flight (MALDI-TOF) and other +two-dimensional mass spectrometry data. In addition to commonly used plotting +and processing methods it includes distinctive features, namely baseline +subtraction methods such as morphological filters (TopHat) or the +statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak +alignment using warping functions, handling of replicated measurements as well +as allowing spectra with different resolutions.") + (license license:gpl3+))) -- 2.11.0