From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 06/16] gnu: Add r-raremetals2. Date: Tue, 17 Jan 2017 15:11:31 +0100 Message-ID: <20170117141141.11694-7-rekado@elephly.net> References: <20170117141141.11694-1-rekado@elephly.net> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:39795) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1cTUUk-0007BW-Q5 for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:24 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1cTUUj-0006J4-K6 for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:18 -0500 Received: from sender163-mail.zoho.com ([74.201.84.163]:21143) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1cTUUj-0006IN-Bn for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:17 -0500 In-Reply-To: <20170117141141.11694-1-rekado@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-raremetals2): New variable. --- gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++ 1 file changed, 31 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 28a0da80e..743e8fdce 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8171,3 +8171,34 @@ unmodeled, or latent sources of noise.") data (variant call format, e.g. VCF or BCF) or meta-analysis results in R.") ;; Any version of the GPL is acceptable (license (list license:gpl2+ license:gpl3+)))) + +(define-public r-raremetals2 + (package + (name "r-raremetals2") + (version "0.1") + (source + (origin + (method url-fetch) + (uri (string-append "http://genome.sph.umich.edu/w/images/" + "b/b7/RareMETALS2_" version ".tar.gz")) + (sha256 + (base32 + "0z5ljcgvnm06ja9lm85a3cniq7slxcy37aqqkxrdidr79an5fs4s")))) + (properties `((upstream-name . "RareMETALS2"))) + (build-system r-build-system) + (propagated-inputs + `(("r-seqminer" ,r-seqminer) + ("r-mvtnorm" ,r-mvtnorm) + ("r-compquadform" ,r-compquadform) + ("r-getopt" ,r-getopt))) + (home-page "http://genome.sph.umich.edu/wiki/RareMETALS2") + (synopsis "Analyze gene-level association tests for binary trait") + (description + "The R package rareMETALS2 is an extension of the R package rareMETALS. +It was designed to meta-analyze gene-level association tests for binary trait. +While rareMETALS offers a near-complete solution for meta-analysis of +gene-level tests for quantitative trait, it does not offer the optimal +solution for binary trait. The package rareMETALS2 offers improved features +for analyzing gene-level association tests in meta-analyses for binary +trait.") + (license license:gpl3))) -- 2.11.0