From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 10/16] gnu: Add r-affyio. Date: Tue, 17 Jan 2017 15:11:35 +0100 Message-ID: <20170117141141.11694-11-rekado@elephly.net> References: <20170117141141.11694-1-rekado@elephly.net> Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:40052) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1cTUUz-0007NB-Bp for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:34 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1cTUUy-0006a2-5B for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:33 -0500 Received: from sender163-mail.zoho.com ([74.201.84.163]:21083) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1cTUUx-0006Y1-Sr for guix-devel@gnu.org; Tue, 17 Jan 2017 09:12:32 -0500 In-Reply-To: <20170117141141.11694-1-rekado@elephly.net> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-affyio): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 51660026e..6cc808c6a 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8280,3 +8280,27 @@ The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS.") (license license:artistic2.0))) + +(define-public r-affyio + (package + (name "r-affyio") + (version "1.44.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affyio" version)) + (sha256 + (base32 + "1svsl4mpk06xm505pap913x69ywks99262krag8y4ygpllj7dfyy")))) + (build-system r-build-system) + (propagated-inputs + `(("r-zlibbioc" ,r-zlibbioc))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/bmbolstad/affyio") + (synopsis "Tools for parsing Affymetrix data files") + (description + "This package provides routines for parsing Affymetrix data files based +upon file format information. The primary focus is on accessing the CEL and +CDF file formats.") + (license license:lgpl2.0+))) -- 2.11.0