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From: Ricardo Wurmus <rekado@elephly.net>
To: guix-devel@gnu.org
Subject: [PATCH 10/16] gnu: Add r-affyio.
Date: Tue, 17 Jan 2017 15:11:35 +0100	[thread overview]
Message-ID: <20170117141141.11694-11-rekado@elephly.net> (raw)
In-Reply-To: <20170117141141.11694-1-rekado@elephly.net>

* gnu/packages/bioinformatics.scm (r-affyio): New variable.
---
 gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 51660026e..6cc808c6a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8280,3 +8280,27 @@ The package contains the original code written by the ISB, and a subset of the
 proteowizard library for mzML and mzIdentML.  The netCDF reading code has
 previously been used in XCMS.")
     (license license:artistic2.0)))
+
+(define-public r-affyio
+  (package
+    (name "r-affyio")
+    (version "1.44.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "affyio" version))
+       (sha256
+        (base32
+         "1svsl4mpk06xm505pap913x69ywks99262krag8y4ygpllj7dfyy"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-zlibbioc" ,r-zlibbioc)))
+    (inputs
+     `(("zlib" ,zlib)))
+    (home-page "https://github.com/bmbolstad/affyio")
+    (synopsis "Tools for parsing Affymetrix data files")
+    (description
+     "This package provides routines for parsing Affymetrix data files based
+upon file format information.  The primary focus is on accessing the CEL and
+CDF file formats.")
+    (license license:lgpl2.0+)))
-- 
2.11.0

  parent reply	other threads:[~2017-01-17 14:12 UTC|newest]

Thread overview: 28+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2017-01-17 14:11 [PATCH 00/16] Bioinfo stuff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 01/16] gnu: Add python-argparse Ricardo Wurmus
2017-01-17 14:49   ` Hartmut Goebel
2017-01-17 15:26     ` Ricardo Wurmus
2017-01-17 18:48       ` Alex Kost
2017-01-17 18:47   ` Alex Kost
2017-01-17 14:11 ` [PATCH 02/16] gnu: Add hisat2 Ricardo Wurmus
2017-01-17 20:36   ` Leo Famulari
2017-01-17 20:49     ` Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 03/16] gnu: Add ribodiff Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 04/16] gnu: Add r-compquadform Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 05/16] gnu: Add r-seqminer Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 06/16] gnu: Add r-raremetals2 Ricardo Wurmus
2017-01-20 13:16   ` Ludovic Courtès
2017-01-20 14:18     ` Ricardo Wurmus
2017-01-20 21:26       ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 07/16] gnu: Add r-maldiquant Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 08/16] gnu: Add r-protgenerics Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 09/16] gnu: Add r-mzr Ricardo Wurmus
2017-01-17 14:11 ` Ricardo Wurmus [this message]
2017-01-17 14:11 ` [PATCH 11/16] gnu: Add r-affy Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 12/16] gnu: Add r-vsn Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 13/16] gnu: Add r-mzid Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 14/16] gnu: Add r-pcamethods Ricardo Wurmus
2017-01-17 14:11 ` [PATCH 15/16] gnu: Add r-msnbase Ricardo Wurmus
2017-01-20 13:17   ` Ludovic Courtès
2017-01-20 13:18   ` Ludovic Courtès
2017-01-17 14:11 ` [PATCH 16/16] gnu: Add r-msnid Ricardo Wurmus

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