unofficial mirror of guix-devel@gnu.org 
 help / color / mirror / code / Atom feed
From: Marius Bakke <mbakke@fastmail.com>
To: guix-devel@gnu.org
Cc: Marius Bakke <mbakke@fastmail.com>
Subject: [PATCH 3/3] gnu: python2-pbcore: Update to 1.2.10.
Date: Sat, 17 Sep 2016 11:10:47 +0100	[thread overview]
Message-ID: <20160917101047.4597-4-mbakke@fastmail.com> (raw)
In-Reply-To: <20160917101047.4597-1-mbakke@fastmail.com>

* gnu/packages/bioinformatics.scm (python2-pbcore): Update to 1.2.10.
[propagated-inputs]: New field. Add python2-pyxb.
---
 gnu/packages/bioinformatics.scm | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cfd098c..3d38042 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3353,13 +3353,13 @@ interrupted by stop codons.  OrfM finds and prints these ORFs.")
 (define-public python2-pbcore
   (package
     (name "python2-pbcore")
-    (version "1.2.8")
+    (version "1.2.10")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "pbcore" version))
               (sha256
                (base32
-                "02pfn5raa3zf739672bg0dkx7z3j2c4nx7vmpfjqy5b12jrqpymk"))))
+                "1kjmv891d6qbpp4shhhvkl02ff4q5xlpnls2513sm2cjcrs52f1i"))))
     (build-system python-build-system)
     (arguments `(#:python ,python-2)) ; pbcore requires Python 2.7
     (inputs
@@ -3372,6 +3372,8 @@ interrupted by stop codons.  OrfM finds and prints these ORFs.")
        ("python-nose" ,python2-nose)
        ("python-setuptools" ,python2-setuptools)
        ("python-sphinx" ,python2-sphinx)))
+    (propagated-inputs
+     `(("python-pyxb" ,python2-pyxb)))
     (home-page "http://pacificbiosciences.github.io/pbcore/")
     (synopsis "Library for reading and writing PacBio data files")
     (description
-- 
2.10.0

      parent reply	other threads:[~2016-09-17 10:11 UTC|newest]

Thread overview: 18+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2016-09-17 10:10 [PATCH 0/3] gnu: python2-pbcore: Update to 1.2.10 Marius Bakke
2016-09-17 10:10 ` [PATCH 1/3] gnu: python-pysam: Update to 0.9.1.4 Marius Bakke
2016-09-17 10:10 ` [PATCH 2/3] gnu: Add python-pyxb Marius Bakke
     [not found]   ` <3bd16b58-b3d1-d47c-2433-c3a721681463@uq.edu.au>
2016-09-20  6:34     ` Ben Woodcroft
2016-09-20  7:06       ` Ben Woodcroft
2016-09-21 21:14         ` Marius Bakke
2016-09-22  0:46           ` Ben Woodcroft
2016-09-22 15:15             ` Marius Bakke
2016-09-23  1:28               ` Ben Woodcroft
2016-09-23 15:56                 ` Marius Bakke
2016-09-23 16:06                   ` Marius Bakke
2016-09-24  0:23                   ` Ben Woodcroft
2016-09-24  3:15                     ` Marius Bakke
2016-09-26 11:15                       ` Ben Woodcroft
2016-09-26 18:32                         ` Marius Bakke
2016-09-27 11:01                           ` Ben Woodcroft
2016-09-30 20:12                           ` Ludovic Courtès
2016-09-17 10:10 ` Marius Bakke [this message]

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=20160917101047.4597-4-mbakke@fastmail.com \
    --to=mbakke@fastmail.com \
    --cc=guix-devel@gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).