From mboxrd@z Thu Jan 1 00:00:00 1970 From: Pjotr Prins Subject: Re: R Date: Thu, 8 Sep 2016 19:01:41 +0200 Message-ID: <20160908170141.GA29369@thebird.nl> References: <20160204193924.GA8852@debian> <20160205100040.GA4213@debian.eduroam.u-bordeaux.fr> <20160205190236.GA8063@debian> <20160205195449.GA8899@debian> <87lh6yx4rr.fsf@mdc-berlin.de> <20160205222426.GA11582@debian> <63b53a76-8343-38cf-ee2b-81ea517e50d9@uq.edu.au> Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:43700) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bi2ik-00027V-30 for guix-devel@gnu.org; Thu, 08 Sep 2016 13:02:42 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bi2ie-0006uA-VG for guix-devel@gnu.org; Thu, 08 Sep 2016 13:02:37 -0400 Received: from mail.thebird.nl ([95.154.246.10]:34225) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bi2ie-0006rP-Pv for guix-devel@gnu.org; Thu, 08 Sep 2016 13:02:32 -0400 Content-Disposition: inline In-Reply-To: <63b53a76-8343-38cf-ee2b-81ea517e50d9@uq.edu.au> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ben Woodcroft Cc: guix-devel@gnu.org OpenBLAS works fine for me - hit the same issue with Python before. Pj. On Thu, Sep 08, 2016 at 09:41:59PM +1000, Ben Woodcroft wrote: > Hi, >=20 > I thought I'd respond to this old thread now that the openblas eigen > error seems to be fixed. I'm interested in using openblas so that > the (as yet not in master) WGCNA package works faster, among other > things: >=20 > https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WG= CNA/faq.html >=20 >=20 > On 06/02/16 08:24, Andreas Enge wrote: > >On Fri, Feb 05, 2016 at 09:48:24PM +0100, Ricardo Wurmus wrote: > >>I would suggest to drop =E2=80=9C--with-lapack=E2=80=9D, too. (I hav= en=E2=80=99t found the time > >>to try building without this flag just now.) The manual says: > >>I don=E2=80=99t remember why I added it in the first place, so I thin= k it=E2=80=99s best > >>to drop it, considering that the manual tells us only to do it if we > >>know what we want to achieve by adding it. > >I did, and it still builds on arm. >=20 > Shall I push the attached patch to core-updates? I tested it on > x86_64. Or, would you mind testing it on arm please Andreas? >=20 > Thanks, > ben > From 012c013661c739b8d90be8bcbfce13349dcaee89 Mon Sep 17 00:00:00 2001 > From: Ben J Woodcroft > Date: Thu, 8 Sep 2016 21:14:12 +1000 > Subject: [PATCH] gnu: r: Add openblas input. >=20 > * gnu/packages/statistics.scm (r)[inputs]: Add openblas. > [arguments]: Adapt configure flags. > --- > gnu/packages/statistics.scm | 2 ++ > 1 file changed, 2 insertions(+) >=20 > diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm > index 990f2fc..e34bcec 100644 > --- a/gnu/packages/statistics.scm > +++ b/gnu/packages/statistics.scm > @@ -136,6 +136,7 @@ be output in text, PostScript, PDF or HTML.") > (lambda _ (zero? (system* "make" "install-info"))))) > #:configure-flags > '("--with-cairo" > + "--with-blas=3Dopenblas" > "--with-libpng" > "--with-jpeglib" > "--with-libtiff" > @@ -170,6 +171,7 @@ be output in text, PostScript, PDF or HTML.") > ("pango" ,pango) > ("curl" ,curl) > ("tzdata" ,tzdata) > + ("openblas" ,openblas) > ("gfortran" ,gfortran) > ("icu4c" ,icu4c) > ("libjpeg" ,libjpeg) > --=20 > 2.9.2 >=20 --=20