From: Pjotr Prins <pjotr.public12@thebird.nl>
To: Ben Woodcroft <b.woodcroft@uq.edu.au>
Cc: guix-devel@gnu.org
Subject: Re: R
Date: Thu, 8 Sep 2016 19:01:41 +0200 [thread overview]
Message-ID: <20160908170141.GA29369@thebird.nl> (raw)
In-Reply-To: <63b53a76-8343-38cf-ee2b-81ea517e50d9@uq.edu.au>
OpenBLAS works fine for me - hit the same issue with Python before.
Pj.
On Thu, Sep 08, 2016 at 09:41:59PM +1000, Ben Woodcroft wrote:
> Hi,
>
> I thought I'd respond to this old thread now that the openblas eigen
> error seems to be fixed. I'm interested in using openblas so that
> the (as yet not in master) WGCNA package works faster, among other
> things:
>
> https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/faq.html
>
>
> On 06/02/16 08:24, Andreas Enge wrote:
> >On Fri, Feb 05, 2016 at 09:48:24PM +0100, Ricardo Wurmus wrote:
> >>I would suggest to drop “--with-lapack”, too. (I haven’t found the time
> >>to try building without this flag just now.) The manual says:
> >>I don’t remember why I added it in the first place, so I think it’s best
> >>to drop it, considering that the manual tells us only to do it if we
> >>know what we want to achieve by adding it.
> >I did, and it still builds on arm.
>
> Shall I push the attached patch to core-updates? I tested it on
> x86_64. Or, would you mind testing it on arm please Andreas?
>
> Thanks,
> ben
> From 012c013661c739b8d90be8bcbfce13349dcaee89 Mon Sep 17 00:00:00 2001
> From: Ben J Woodcroft <donttrustben@gmail.com>
> Date: Thu, 8 Sep 2016 21:14:12 +1000
> Subject: [PATCH] gnu: r: Add openblas input.
>
> * gnu/packages/statistics.scm (r)[inputs]: Add openblas.
> [arguments]: Adapt configure flags.
> ---
> gnu/packages/statistics.scm | 2 ++
> 1 file changed, 2 insertions(+)
>
> diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
> index 990f2fc..e34bcec 100644
> --- a/gnu/packages/statistics.scm
> +++ b/gnu/packages/statistics.scm
> @@ -136,6 +136,7 @@ be output in text, PostScript, PDF or HTML.")
> (lambda _ (zero? (system* "make" "install-info")))))
> #:configure-flags
> '("--with-cairo"
> + "--with-blas=openblas"
> "--with-libpng"
> "--with-jpeglib"
> "--with-libtiff"
> @@ -170,6 +171,7 @@ be output in text, PostScript, PDF or HTML.")
> ("pango" ,pango)
> ("curl" ,curl)
> ("tzdata" ,tzdata)
> + ("openblas" ,openblas)
> ("gfortran" ,gfortran)
> ("icu4c" ,icu4c)
> ("libjpeg" ,libjpeg)
> --
> 2.9.2
>
--
prev parent reply other threads:[~2016-09-08 17:02 UTC|newest]
Thread overview: 14+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-02-04 19:39 R Andreas Enge
2016-02-05 10:00 ` R Andreas Enge
2016-02-05 10:55 ` R Pjotr Prins
2016-02-05 12:37 ` R Ricardo Wurmus
2016-02-05 17:17 ` R Ricardo Wurmus
2016-02-05 17:59 ` R Kyle Meyer
2016-02-05 19:02 ` R Andreas Enge
2016-02-05 19:54 ` R Andreas Enge
2016-02-05 20:48 ` R Ricardo Wurmus
2016-02-05 22:24 ` R Andreas Enge
2016-09-08 11:41 ` R Ben Woodcroft
2016-09-08 13:02 ` R Ricardo Wurmus
2016-09-09 12:07 ` R Ben Woodcroft
2016-09-08 17:01 ` Pjotr Prins [this message]
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