From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH 1/2] gnu: Add r-rhtslib. Date: Thu, 18 Aug 2016 13:09:41 +0200 Message-ID: <20160818110942.28804-1-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:41162) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1baLCx-0003pC-KQ for guix-devel@gnu.org; Thu, 18 Aug 2016 07:10:00 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1baLCr-0002Oj-2Q for guix-devel@gnu.org; Thu, 18 Aug 2016 07:09:56 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:55221) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1baLCq-0002Ob-Q8 for guix-devel@gnu.org; Thu, 18 Aug 2016 07:09:52 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id 31E0C381015 for ; Thu, 18 Aug 2016 13:09:52 +0200 (CEST) Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id 5scuJiZSqDTS for ; Thu, 18 Aug 2016 13:09:46 +0200 (CEST) Received: from HTCATWO.mdc-berlin.net (mab.citx.mdc-berlin.de [141.80.36.102]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Thu, 18 Aug 2016 13:09:46 +0200 (CEST) List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-rhtslib): New variable. --- gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 233b7a8..ade6e37 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6325,6 +6325,31 @@ two-dimensional genome scans.") libraries for systems that do not have these available via other means.") (license license:artistic2.0))) +(define-public r-rhtslib + (package + (name "r-rhtslib") + (version "1.4.3") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rhtslib" version)) + (sha256 + (base32 + "1wgpn9x8abjj7fc087pdavqc3fz0pl5xdh231mgjila18irwlhb3")))) + (properties `((upstream-name . "Rhtslib"))) + (build-system r-build-system) + (propagated-inputs + `(("r-zlibbioc" ,r-zlibbioc))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/nhayden/Rhtslib") + (synopsis "High-throughput sequencing library as an R package") + (description + "This package provides the HTSlib C library for high-throughput +nucleotide sequence analysis. The package is primarily useful to developers +of other R packages who wish to make use of HTSlib.") + (license license:lgpl2.0+))) + (define-public emboss (package (name "emboss") -- 2.9.0