From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH 1/2] gnu: Add r-rhtslib.
Date: Thu, 18 Aug 2016 13:09:41 +0200 [thread overview]
Message-ID: <20160818110942.28804-1-ricardo.wurmus@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (r-rhtslib): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 233b7a8..ade6e37 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6325,6 +6325,31 @@ two-dimensional genome scans.")
libraries for systems that do not have these available via other means.")
(license license:artistic2.0)))
+(define-public r-rhtslib
+ (package
+ (name "r-rhtslib")
+ (version "1.4.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Rhtslib" version))
+ (sha256
+ (base32
+ "1wgpn9x8abjj7fc087pdavqc3fz0pl5xdh231mgjila18irwlhb3"))))
+ (properties `((upstream-name . "Rhtslib")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-zlibbioc" ,r-zlibbioc)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://github.com/nhayden/Rhtslib")
+ (synopsis "High-throughput sequencing library as an R package")
+ (description
+ "This package provides the HTSlib C library for high-throughput
+nucleotide sequence analysis. The package is primarily useful to developers
+of other R packages who wish to make use of HTSlib.")
+ (license license:lgpl2.0+)))
+
(define-public emboss
(package
(name "emboss")
--
2.9.0
next reply other threads:[~2016-08-18 11:10 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-08-18 11:09 Ricardo Wurmus [this message]
2016-08-18 11:09 ` [PATCH 2/2] gnu: Add r-bamsignals Ricardo Wurmus
2016-08-21 20:27 ` Leo Famulari
2016-08-22 14:53 ` Ricardo Wurmus
2016-08-21 20:26 ` [PATCH 1/2] gnu: Add r-rhtslib Leo Famulari
2016-08-22 14:53 ` Ricardo Wurmus
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