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From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH 1/2] gnu: Add r-rhtslib.
Date: Thu, 18 Aug 2016 13:09:41 +0200	[thread overview]
Message-ID: <20160818110942.28804-1-ricardo.wurmus@mdc-berlin.de> (raw)

* gnu/packages/bioinformatics.scm (r-rhtslib): New variable.
---
 gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 233b7a8..ade6e37 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6325,6 +6325,31 @@ two-dimensional genome scans.")
 libraries for systems that do not have these available via other means.")
     (license license:artistic2.0)))
 
+(define-public r-rhtslib
+  (package
+    (name "r-rhtslib")
+    (version "1.4.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "Rhtslib" version))
+       (sha256
+        (base32
+         "1wgpn9x8abjj7fc087pdavqc3fz0pl5xdh231mgjila18irwlhb3"))))
+    (properties `((upstream-name . "Rhtslib")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-zlibbioc" ,r-zlibbioc)))
+    (inputs
+     `(("zlib" ,zlib)))
+    (home-page "https://github.com/nhayden/Rhtslib")
+    (synopsis "High-throughput sequencing library as an R package")
+    (description
+     "This package provides the HTSlib C library for high-throughput
+nucleotide sequence analysis.  The package is primarily useful to developers
+of other R packages who wish to make use of HTSlib.")
+    (license license:lgpl2.0+)))
+
 (define-public emboss
   (package
     (name "emboss")
-- 
2.9.0

             reply	other threads:[~2016-08-18 11:10 UTC|newest]

Thread overview: 6+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2016-08-18 11:09 Ricardo Wurmus [this message]
2016-08-18 11:09 ` [PATCH 2/2] gnu: Add r-bamsignals Ricardo Wurmus
2016-08-21 20:27   ` Leo Famulari
2016-08-22 14:53     ` Ricardo Wurmus
2016-08-21 20:26 ` [PATCH 1/2] gnu: Add r-rhtslib Leo Famulari
2016-08-22 14:53   ` Ricardo Wurmus

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