From mboxrd@z Thu Jan 1 00:00:00 1970 From: Efraim Flashner Subject: Re: [PATCH] gnu: Add r-genomationdata. Date: Mon, 23 May 2016 21:09:56 +0300 Message-ID: <20160523180956.GC18979@debian-netbook> References: <1464015436-27911-1-git-send-email-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="Qrgsu6vtpU/OV/zm" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:54686) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1b4uIs-0006ZW-3R for guix-devel@gnu.org; Mon, 23 May 2016 14:10:14 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1b4uIo-0000r6-CH for guix-devel@gnu.org; Mon, 23 May 2016 14:10:09 -0400 Received: from flashner.co.il ([178.62.234.194]:45503) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1b4uIo-0000oA-0C for guix-devel@gnu.org; Mon, 23 May 2016 14:10:06 -0400 Content-Disposition: inline In-Reply-To: <1464015436-27911-1-git-send-email-ricardo.wurmus@mdc-berlin.de> List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: Ricardo Wurmus Cc: guix-devel@gnu.org --Qrgsu6vtpU/OV/zm Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Mon, May 23, 2016 at 04:57:16PM +0200, Ricardo Wurmus wrote: > * gnu/packages/bioinformatics.scm (r-genomationdata): New variable. > --- > gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ > 1 file changed, 26 insertions(+) >=20 > diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatic= s.scm > index fbaae12..51c371c 100644 > --- a/gnu/packages/bioinformatics.scm > +++ b/gnu/packages/bioinformatics.scm > @@ -5002,6 +5002,32 @@ genomic feature data as long as it has minimal inf= ormation on the locations of > genomic intervals. In addition, it can use BAM or BigWig files as input= =2E") > (license license:artistic2.0))) > =20 > +(define-public r-genomationdata > + (package > + (name "r-genomationdata") > + (version "1.4.0") > + (source (origin > + (method url-fetch) > + ;; We cannot use bioconductor-uri here because this tarbal= l is > + ;; located under "data/annotation/" instead of "bioc/". > + (uri (string-append "https://bioconductor.org/packages/" > + "release/data/experiment/src/contrib/" > + "genomationData_" version ".tar.gz")) > + (sha256 > + (base32 > + "1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79"))= )) > + (build-system r-build-system) > + (arguments `(#:substitutable? #f)) ^^^^ why not? > + (native-inputs > + `(("r-knitr" ,r-knitr))) > + (home-page "http://bioinformatics.mdc-berlin.de/genomation/") > + (synopsis "Experimental data for use with the genomation package") > + (description > + "This package contains experimental genetic data for use with the > +genomation package. Included are Chip Seq, Methylation and Cage data, > +downloaded from Encode.") > + (license license:gpl3+))) > + > (define-public r-org-hs-eg-db > (package > (name "r-org-hs-eg-db") > --=20 > 2.7.3 >=20 Looks good --=20 Efraim Flashner =D7=90=D7=A4=D7=A8=D7=99=D7=9D = =D7=A4=D7=9C=D7=A9=D7=A0=D7=A8 GPG key =3D A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted --Qrgsu6vtpU/OV/zm Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCgAGBQJXQ0dwAAoJEPTB05F+rO6TvQAQAItkQCfZmI9vtWcD3D0cW95l 7gStC2kORue8fevVOoNh/tCwW5DhFHGkp4gShw+h0wOb+KDYmtplvQBwTopr5eux 1tpiAplaS8OKngFsnug1x+mZCCW9cIDV9zhWyD5OKWkHdlb8vbD+/NPSd5AXhZq2 7feh44rXu5Aa9641GMeRah7phM9h4a79bxp48OzgMM9hSn2DiUFM1Swq12We50VV hpK0C1n/Hx6aSKOnpC5iJk/AVOVSJjWsC/rJo878IkguOGZuDC3kXpaqxNgjpARZ xXruf/4EAe+TNIFJMR0FtOm8RKs6cdFAaUFrDInn+CTajImJwc2J67AOoTsJMf2Y F2AYdcRSBhOiuVpMEIIeLbNjP0NzfmmMSPFxWu1gTTxHGkg0E6fTsXSmlEEPjsLo a/YslT6HizfE0FnWNCSQidnIOxA7A/u1iTpPDObW4Ajy5aFs6E+7qiCL59yA1Ip3 6yKlawUMuhwneqG1dOJhFxx0e0v54dwbLWlKscIfwmR4vSpAcA9CEwYvJkwBe/Tn A9LhHND0fEkK7ZWhJlCwqkwUBQPs2YntJFl+MCbTfJH/9YMhR5yoh79LWE7gG0k9 AO3KJUIz61078TN3KkELA1YWteTsJ+amFpgAPq0m3iWxc3iA63TOtvttjD9+h+qI JujGj+4zhPMWRzN36oFR =dnRH -----END PGP SIGNATURE----- --Qrgsu6vtpU/OV/zm--