From mboxrd@z Thu Jan  1 00:00:00 1970
From: Andreas Enge <andreas@enge.fr>
Subject: Re: [PATCH] Fix jellyfish on non-x86_64
Date: Sun, 28 Feb 2016 00:31:17 +0100
Message-ID: <20160227233117.GA12075@solar>
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To: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
Cc: guix-devel <guix-devel@gnu.org>

Hello,

on armhf, I get lots of errors such as these:

unit_tests/test_mer_dna.cc: In instantiation of ‘void {anonymous}::MerDNA_GetBits_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = {anonymous}::VTC<jellyfish::mer_dna_ns::mer_base_dynamic<long long unsigned int>, 1>]’:
unit_tests/test_mer_dna.cc:529:1:   required from here
unit_tests/test_mer_dna.cc:464:96: error: no matching function for call to ‘min(long unsigned int, unsigned int)’
unit_tests/test_mer_dna.cc:464:96: note: candidates are:
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
                 from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
                 from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5: note: template<class _Tp> const _Tp& std::min(const _Tp&, const _Tp&)
     min(const _Tp& __a, const _Tp& __b)
     ^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5: note:   template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note:   deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
       std::min(this->GetParam().size() - start, 8 * sizeof(typename TypeParam::Type::base_type));
                                                                                                ^
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
                 from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
                 from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5: note: template<class _Tp, class _Compare> const _Tp& std::min(const _Tp&, const _Tp&, _Compare)
     min(const _Tp& __a, const _Tp& __b, _Compare __comp)
     ^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5: note:   template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note:   deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
       std::min(this->GetParam().size() - start, 8 * sizeof(typename TypeParam::Type::base_type));
                                                                                                ^
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
                 from ./include/jellyfish/misc.hpp:34,
                 from ./include/jellyfish/mer_dna.hpp:33,
                 from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5: note: template<class _Tp> _Tp std::min(std::initializer_list<_Tp>)
     min(initializer_list<_Tp> __l)
     ^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5: note:   template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note:   mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
       std::min(this->GetParam().size() - start, 8 * sizeof(typename TypeParam::Type::base_type));
                                                                                                ^
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
                 from ./include/jellyfish/misc.hpp:34,
                 from ./include/jellyfish/mer_dna.hpp:33,
                 from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3444:5: note: template<class _Tp, class _Compare> _Tp std::min(std::initializer_list<_Tp>, _Compare)
     min(initializer_list<_Tp> __l, _Compare __comp)
     ^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3444:5: note:   template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note:   mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
       std::min(this->GetParam().size() - start, 8 * sizeof(typename TypeParam::Type::base_type));
                                                                                                ^
unit_tests/test_mer_dna.cc: In instantiation of ‘void {anonymous}::MerDNA_GetBits_Test<gtest_TypeParam_>::TestBody() [with gtest_TypeParam_ = {anonymous}::VTC<jellyfish::mer_dna_ns::mer_base_dynamic<long long unsigned int>, 0>]’:
unit_tests/test_mer_dna.cc:529:1:   required from here
unit_tests/test_mer_dna.cc:464:96: error: no matching function for call to ‘min(long unsigned int, unsigned int)’
unit_tests/test_mer_dna.cc:464:96: note: candidates are:
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
                 from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
                 from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5: note: template<class _Tp> const _Tp& std::min(const _Tp&, const _Tp&)
     min(const _Tp& __a, const _Tp& __b)
     ^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:194:5: note:   template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note:   deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
       std::min(this->GetParam().size() - start, 8 * sizeof(typename TypeParam::Type::base_type));
                                                                                                ^
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_tree.h:61:0,
                 from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/map:60,
                 from unit_tests/test_mer_dna.cc:20:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5: note: template<class _Tp, class _Compare> const _Tp& std::min(const _Tp&, const _Tp&, _Compare)
     min(const _Tp& __a, const _Tp& __b, _Compare __comp)
     ^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algobase.h:240:5: note:   template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note:   deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘unsigned int’)
       std::min(this->GetParam().size() - start, 8 * sizeof(typename TypeParam::Type::base_type));
                                                                                                ^
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
                 from ./include/jellyfish/misc.hpp:34,
                 from ./include/jellyfish/mer_dna.hpp:33,
                 from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5: note: template<class _Tp> _Tp std::min(std::initializer_list<_Tp>)
     min(initializer_list<_Tp> __l)
     ^
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3439:5: note:   template argument deduction/substitution failed:
unit_tests/test_mer_dna.cc:464:96: note:   mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
       std::min(this->GetParam().size() - start, 8 * sizeof(typename TypeParam::Type::base_type));
                                                                                                ^
In file included from /gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/algorithm:62:0,
                 from ./include/jellyfish/misc.hpp:34,
                 from ./include/jellyfish/mer_dna.hpp:33,
                 from unit_tests/test_mer_dna.cc:24:
/gnu/store/i23hviqfy0pw7xjvqy263k55pz0zaf8m-gcc-4.9.3/include/c++/bits/stl_algo.h:3444:5: note: template<class _Tp, class _Compare> _Tp std::min(std::initializer_list<_Tp>, _Compare)
     min(initializer_list<_Tp> __l, _Compare __comp)

Is there maybe an assumption of 64bit?

Andreas