From mboxrd@z Thu Jan 1 00:00:00 1970 From: Pjotr Prins Subject: [PATCH] gnu: Add ruby-bio-locus. Date: Mon, 14 Sep 2015 16:32:27 +0200 Message-ID: <20150914143227.GA29997@thebird.nl> References: <20150914132433.GA29632@thebird.nl> <20150914141852.GA29936@thebird.nl> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:41087) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZbUpy-0002Ck-OX for guix-devel@gnu.org; Mon, 14 Sep 2015 10:34:32 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZbUpv-0004ho-Eb for guix-devel@gnu.org; Mon, 14 Sep 2015 10:34:30 -0400 Received: from mail.thebird.nl ([95.154.246.10]:50912) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZbUpv-0004hb-9Q for guix-devel@gnu.org; Mon, 14 Sep 2015 10:34:27 -0400 Content-Disposition: inline In-Reply-To: List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org To: "Thompson, David" Cc: guix-devel * gnu/packages/ruby.scm (ruby-bio-locus): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 03eb2df..c4ba0e0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2616,3 +2616,27 @@ data in the form of VCF files.") ;; The license is declared as LGPLv3 in the README and ;; at http://vcftools.sourceforge.net/license.html (license license:lgpl3))) + +(define-public bio-locus + (package + (name "bio-locus") + (version "0.0.7") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-locus" version)) + (sha256 + (base32 + "02vmrxyimkj9sahsp4zhfhnmbvz6dbbqz1y01vglf8cbwvkajfl0")))) + (build-system ruby-build-system) + (native-inputs + `(("ruby-rspec" ,ruby-rspec))) + (synopsis "Tool for fast querying of genome locations") + (description + "Bio-locus is a tabix-like tool for fast querying of genome +locations. Many file formats in bioinformatics contain records that +start with a chromosome name and a position for a SNP, or a start-end +position for indels. Bio-locus allows users to store this chr+pos or +chr+pos+alt information in a fast database.") + (home-page "https://github.com/pjotrp/bio-locus") + (license license:expat))) -- 2.4.3