From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH] Add recursive CRAN importer
Date: Tue, 24 May 2016 14:53:30 +0200 [thread overview]
Message-ID: <1464094411-8277-1-git-send-email-ricardo.wurmus@mdc-berlin.de> (raw)
attached is a patch series that gives us a recursive CRAN importer. I still
haven't documented it in the manual, because I'm not sure if the
implementation is acceptable.
Simply put, the procedure that produces a package expression now returns
multiple values. The first is the package expression, the second is a list of
dependencies (with their upstream names). This allows us to go through that
list and check if any unpackaged inputs are among them.
The recursive importer stops when a package cannot be imported (e.g. when a
bioconductor package has unpackaged CRAN dependencies), or when all packages
either already existed at runtime or have been packaged.
To make this work well I had to create a list of packages that should not be
imported (because they are part of the default R installation), and I had to
make sure that R packages always get a predictable Guix package name.
Comments are very welcome!
~~ Ricardo
next reply other threads:[~2016-05-24 12:53 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-05-24 12:53 Ricardo Wurmus [this message]
2016-05-24 12:53 ` [PATCH] gnu: Add r-knitrbootstrap Ricardo Wurmus
2016-05-27 17:00 ` Leo Famulari
2016-05-28 7:36 ` Ricardo Wurmus
2016-05-28 15:56 ` Leo Famulari
2016-05-24 13:08 ` [PATCH] Add recursive CRAN importer Ricardo Wurmus
-- strict thread matches above, loose matches on Subject: below --
2016-05-23 15:40 Ricardo Wurmus
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://guix.gnu.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=1464094411-8277-1-git-send-email-ricardo.wurmus@mdc-berlin.de \
--to=ricardo.wurmus@mdc-berlin.de \
--cc=guix-devel@gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/guix.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).