From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH] gnu: Add r-genomationdata.
Date: Mon, 23 May 2016 16:57:16 +0200 [thread overview]
Message-ID: <1464015436-27911-1-git-send-email-ricardo.wurmus@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (r-genomationdata): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fbaae12..51c371c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5002,6 +5002,32 @@ genomic feature data as long as it has minimal information on the locations of
genomic intervals. In addition, it can use BAM or BigWig files as input.")
(license license:artistic2.0)))
+(define-public r-genomationdata
+ (package
+ (name "r-genomationdata")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://bioconductor.org/packages/"
+ "release/data/experiment/src/contrib/"
+ "genomationData_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79"))))
+ (build-system r-build-system)
+ (arguments `(#:substitutable? #f))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "http://bioinformatics.mdc-berlin.de/genomation/")
+ (synopsis "Experimental data for use with the genomation package")
+ (description
+ "This package contains experimental genetic data for use with the
+genomation package. Included are Chip Seq, Methylation and Cage data,
+downloaded from Encode.")
+ (license license:gpl3+)))
+
(define-public r-org-hs-eg-db
(package
(name "r-org-hs-eg-db")
--
2.7.3
next reply other threads:[~2016-05-23 14:57 UTC|newest]
Thread overview: 6+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-05-23 14:57 Ricardo Wurmus [this message]
2016-05-23 18:09 ` [PATCH] gnu: Add r-genomationdata Efraim Flashner
2016-05-24 6:36 ` Ricardo Wurmus
2016-05-24 7:09 ` Efraim Flashner
2016-05-24 9:52 ` Ludovic Courtès
2016-05-31 14:30 ` Ricardo Wurmus
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