From mboxrd@z Thu Jan 1 00:00:00 1970 From: Ricardo Wurmus Subject: [PATCH] gnu: Add r-centipede. Date: Mon, 2 May 2016 16:49:21 +0200 Message-ID: <1462200561-19162-1-git-send-email-ricardo.wurmus@mdc-berlin.de> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:39311) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1axFAb-0007IW-CR for guix-devel@gnu.org; Mon, 02 May 2016 10:50:03 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1axFAP-0006DZ-AM for guix-devel@gnu.org; Mon, 02 May 2016 10:49:51 -0400 Received: from sinope02.bbbm.mdc-berlin.de ([141.80.25.24]:47403) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1axFAN-0006BA-Vx for guix-devel@gnu.org; Mon, 02 May 2016 10:49:45 -0400 Received: from localhost (localhost [127.0.0.1]) by sinope02.bbbm.mdc-berlin.de (Postfix) with ESMTP id 49EC9FE52 for ; Mon, 2 May 2016 16:49:30 +0200 (CEST) Received: from sinope02.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (sinope02.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id 0y335u9YW6DF for ; Mon, 2 May 2016 16:49:24 +0200 (CEST) Received: from HTCAONE.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by sinope02.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Mon, 2 May 2016 16:49:24 +0200 (CEST) List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+gcggd-guix-devel=m.gmane.org@gnu.org Sender: "Guix-devel" To: guix-devel@gnu.org * gnu/packages/bioinformatics.scm (r-centipede): New variable. --- gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 7d025ef..d7957cf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -441,6 +441,27 @@ pybedtools extends BEDTools by offering feature-level manipulations from with Python.") (license license:gpl2+))) +(define-public r-centipede + (package + (name "r-centipede") + (version "1.2") + (source (origin + (method url-fetch) + (uri (string-append "http://download.r-forge.r-project.org/" + "src/contrib/CENTIPEDE_" version ".tar.gz")) + (sha256 + (base32 + "1hsx6qgwr0i67fhy9257zj7s0ppncph2hjgbia5nn6nfmj0ax6l9")))) + (build-system r-build-system) + (home-page "http://centipede.uchicago.edu/") + (synopsis "Predict transcription factor binding sites") + (description + "Centipede fits a bayesian hierarchical mixture model to learn +transcription-factor-specific distribution of experimental data on a +particular cell-type for a set of candidate binding sites described by a +genetic motif.") + (license (list license:gpl2+ license:gpl3+)))) + (define-public bioperl-minimal (let* ((inputs `(("perl-module-build" ,perl-module-build) ("perl-data-stag" ,perl-data-stag) -- 2.7.3