From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
To: guix-devel@gnu.org
Subject: [PATCH] gnu: Add r-centipede.
Date: Mon, 2 May 2016 16:49:21 +0200 [thread overview]
Message-ID: <1462200561-19162-1-git-send-email-ricardo.wurmus@mdc-berlin.de> (raw)
* gnu/packages/bioinformatics.scm (r-centipede): New variable.
---
gnu/packages/bioinformatics.scm | 21 +++++++++++++++++++++
1 file changed, 21 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7d025ef..d7957cf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -441,6 +441,27 @@ pybedtools extends BEDTools by offering feature-level manipulations from with
Python.")
(license license:gpl2+)))
+(define-public r-centipede
+ (package
+ (name "r-centipede")
+ (version "1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "http://download.r-forge.r-project.org/"
+ "src/contrib/CENTIPEDE_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1hsx6qgwr0i67fhy9257zj7s0ppncph2hjgbia5nn6nfmj0ax6l9"))))
+ (build-system r-build-system)
+ (home-page "http://centipede.uchicago.edu/")
+ (synopsis "Predict transcription factor binding sites")
+ (description
+ "Centipede fits a bayesian hierarchical mixture model to learn
+transcription-factor-specific distribution of experimental data on a
+particular cell-type for a set of candidate binding sites described by a
+genetic motif.")
+ (license (list license:gpl2+ license:gpl3+))))
+
(define-public bioperl-minimal
(let* ((inputs `(("perl-module-build" ,perl-module-build)
("perl-data-stag" ,perl-data-stag)
--
2.7.3
next reply other threads:[~2016-05-02 14:50 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-05-02 14:49 Ricardo Wurmus [this message]
2016-05-02 18:42 ` [PATCH] gnu: Add r-centipede Leo Famulari
2016-05-02 18:50 ` Ricardo Wurmus
2016-05-02 23:24 ` Ben Woodcroft
2017-01-16 22:20 ` Ricardo Wurmus
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