From: Konrad Hinsen <konrad.hinsen@fastmail.net>
To: 57136@debbugs.gnu.org
Subject: bug#57136: Snakemake cannot execute remote jobs
Date: Thu, 11 Aug 2022 10:39:56 +0200 [thread overview]
Message-ID: <m1sfm32mxv.fsf@fastmail.net> (raw)
The execution of Snakemake workflows fails on a cluster because the
script that Snakemake executes remotely does not reference Python
correctly.
This is due to a patch applied in the Guix package
definition (build phase call-wrapper-not-wrapped-snakemake,
https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/python-xyz.scm#n9713)
which is outdated. The corresponding code in Snakemake was changed
significantly in the following commit:
https://github.com/snakemake/snakemake/commit/e87cc979bea0567e1cd97722d385f472857df83c#diff-438f3317205fd7130727d0589d2fc1a6c2e1f6fc48c2c04d354a8a09b91ba2f4
Cheers,
Konrad
next reply other threads:[~2022-08-11 8:41 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-08-11 8:39 Konrad Hinsen [this message]
2022-08-25 11:14 ` bug#57136: Snakemake cannot execute remote jobs Matthieu Simonin
2022-08-25 18:26 ` Konrad Hinsen
2022-08-25 18:50 ` Konrad Hinsen
2022-08-29 16:50 ` Konrad Hinsen
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