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Thu, 08 Jul 2021 23:57:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:46497) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1m1hdO-0003pH-Hm for bug-guix@gnu.org; Thu, 08 Jul 2021 23:57:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1m1hdO-0000QJ-BH for bug-guix@gnu.org; Thu, 08 Jul 2021 23:57:02 -0400 X-Loop: help-debbugs@gnu.org Subject: bug#49477: [core-updates] python-pyyaml fails on sanity-check Resent-From: John Kehayias Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Fri, 09 Jul 2021 03:57:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 49477 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 49477@debbugs.gnu.org X-Debbugs-Original-To: "bug-guix@gnu.org" Received: via spool by submit@debbugs.gnu.org id=B.16258029721561 (code B ref -1); Fri, 09 Jul 2021 03:57:02 +0000 Received: (at submit) by debbugs.gnu.org; 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aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=protonmail.com header.s=protonmail header.b=J1UJIRVe; spf=pass (aspmx1.migadu.com: domain of bug-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=bug-guix-bounces@gnu.org X-Migadu-Spam-Score: -2.91 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=protonmail.com header.s=protonmail header.b=J1UJIRVe; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of bug-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=bug-guix-bounces@gnu.org X-Migadu-Queue-Id: 33F491B24D X-Spam-Score: -2.91 X-Migadu-Scanner: scn0.migadu.com X-TUID: 9ugxr0ruo14Z Perhaps due to recent addition/changes for python sanity-check? Here is the relevant portion of the log from running ./pre-inst-env guix bu= ild python-pyyaml on core-updates: warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'yaml._yaml' extension creating build/temp.linux-x86_64-3.9 creating build/temp.linux-x86_64-3.9/yaml gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wal= l -fno-semantic-interposition -fPIC -I/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjm= kgxxfq-python-3.9.5/include/python3.9 -c yaml/_yaml.c -o build/temp.linux-x= 86_64-3.9/yaml/_yaml.o gcc: error: yaml/_yaml.c: No such file or directory gcc: fatal error: no input files compilation terminated. Error compiling module, falling back to pure Python phase `build' succeeded after 0.3 seconds starting phase `install' running "python setup.py" with command "install" and parameters ("--prefix= =3D/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1" "--no-c= ompile" "--single-version-externally-managed" "--root=3D/") running install running build running build_py warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'yaml._yaml' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wal= l -fno-semantic-interposition -fPIC -I/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjm= kgxxfq-python-3.9.5/include/python3.9 -c yaml/_yaml.c -o build/temp.linux-x= 86_64-3.9/yaml/_yaml.o gcc: error: yaml/_yaml.c: No such file or directory gcc: fatal error: no input files compilation terminated. Error compiling module, falling back to pure Python running install_lib creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1 creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9 creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9/site-packages creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9/site-packages/_yaml copying build/lib.linux-x86_64-3.9/_yaml/__init__.py -> /gnu/store/i9aqd2hc= rfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/_y= aml creating /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/__init__.py -> /gnu/store/i9aqd2hcr= fc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yam= l copying build/lib.linux-x86_64-3.9/yaml/composer.py -> /gnu/store/i9aqd2hcr= fc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yam= l copying build/lib.linux-x86_64-3.9/yaml/constructor.py -> /gnu/store/i9aqd2= hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/= yaml copying build/lib.linux-x86_64-3.9/yaml/cyaml.py -> /gnu/store/i9aqd2hcrfc6= 8ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/dumper.py -> /gnu/store/i9aqd2hcrfc= 68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/emitter.py -> /gnu/store/i9aqd2hcrf= c68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/error.py -> /gnu/store/i9aqd2hcrfc6= 8ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/events.py -> /gnu/store/i9aqd2hcrfc= 68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/loader.py -> /gnu/store/i9aqd2hcrfc= 68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/nodes.py -> /gnu/store/i9aqd2hcrfc6= 8ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/parser.py -> /gnu/store/i9aqd2hcrfc= 68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/reader.py -> /gnu/store/i9aqd2hcrfc= 68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/representer.py -> /gnu/store/i9aqd2= hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/= yaml copying build/lib.linux-x86_64-3.9/yaml/resolver.py -> /gnu/store/i9aqd2hcr= fc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yam= l copying build/lib.linux-x86_64-3.9/yaml/scanner.py -> /gnu/store/i9aqd2hcrf= c68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml copying build/lib.linux-x86_64-3.9/yaml/serializer.py -> /gnu/store/i9aqd2h= crfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/y= aml copying build/lib.linux-x86_64-3.9/yaml/tokens.py -> /gnu/store/i9aqd2hcrfc= 68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages/yaml warning: install_lib: byte-compiling is disabled, skipping. running install_egg_info running egg_info writing lib3/PyYAML.egg-info/PKG-INFO writing dependency_links to lib3/PyYAML.egg-info/dependency_links.txt writing top-level names to lib3/PyYAML.egg-info/top_level.txt warning: the 'license_file' option is deprecated, use 'license_files' inste= ad adding license file 'LICENSE' (matched pattern 'LICENSE') reading manifest file 'lib3/PyYAML.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'lib3/PyYAML.egg-info/SOURCES.txt' Copying lib3/PyYAML.egg-info to /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs= -python-pyyaml-5.4.1/lib/python3.9/site-packages/PyYAML-5.4.1-py3.9.egg-inf= o running install_scripts Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1'..= . Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b'... Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9'... Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9/site-packages'... Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9/site-packages/PyYAML-5.4.1-py3.9.egg-info'... Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9/site-packages/_yaml'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/_yaml/__init__.py'... Listing '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/li= b/python3.9/site-packages/yaml'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/__init__.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/composer.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/constructor.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/cyaml.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/dumper.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/emitter.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/error.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/events.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/loader.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/nodes.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/parser.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/reader.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/representer.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/resolver.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/scanner.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/serializer.py'... Compiling '/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/= lib/python3.9/site-packages/yaml/tokens.py'... phase `install' succeeded after 0.5 seconds starting phase `add-install-to-pythonpath' phase `add-install-to-pythonpath' succeeded after 0.0 seconds starting phase `add-install-to-path' phase `add-install-to-path' succeeded after 0.0 seconds starting phase `wrap' find-files: /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1= /bin: No such file or directory find-files: /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1= /sbin: No such file or directory phase `wrap' succeeded after 0.0 seconds starting phase `check' running "python setup.py" with command "test" and parameters () running test running build_py warning: build_py: byte-compiling is disabled, skipping. running build_ext building 'yaml._yaml' extension gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wal= l -fno-semantic-interposition -fPIC -I/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjm= kgxxfq-python-3.9.5/include/python3.9 -c yaml/_yaml.c -o build/temp.linux-x= 86_64-3.9/yaml/_yaml.o gcc: error: yaml/_yaml.c: No such file or directory gcc: fatal error: no input files compilation terminated. Error compiling module, falling back to pure Python ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ...........................................................................= ............. =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D TESTS: 1288 phase `check' succeeded after 4.3 seconds starting phase `sanity-check' validating 'PyYAML' /gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyya= ml-5.4.1/lib/python3.9/site-packages ...checking requirements: OK ...trying to load module _yaml: ERROR: Traceback (most recent call last): File "/gnu/store/slim8x2ppjhici2iiabmyvg9lxyikiwy-sanity-check.py", line = 69, in importlib.import_module(name) File "/gnu/store/4nrih35yjsz2kwhr4pwxnkdzjmkgxxfq-python-3.9.5/lib/python= 3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocke= d File "", line 680, in _load_unlocked File "", line 855, in exec_module File "", line 228, in _call_with_frames_remo= ved File "/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib= /python3.9/site-packages/_yaml/__init__.py", line 14, in raise exc("No module named '_yaml'") ModuleNotFoundError: No module named '_yaml' ...trying to load module yaml: OK error: in phase 'sanity-check': uncaught exception: %exception #<&invoke-error program: "python" arguments: ("/gnu/store/slim8x= 2ppjhici2iiabmyvg9lxyikiwy-sanity-check.py" "/gnu/store/i9aqd2hcrfc68ykd24n= njw1nzrdyazrs-python-pyyaml-5.4.1/lib/python3.9/site-packages") exit-status= : 1 term-signal: #f stop-signal: #f> phase `sanity-check' failed after 0.2 seconds command "python" "/gnu/store/slim8x2ppjhici2iiabmyvg9lxyikiwy-sanity-check.= py" "/gnu/store/i9aqd2hcrfc68ykd24nnjw1nzrdyazrs-python-pyyaml-5.4.1/lib/py= thon3.9/site-packages" failed with status 1 builder for `/gnu/store/m9vvvh5qpkrcd0hra3dpri1yqns9m36w-python-pyyaml-5.4.= 1.drv' failed with exit code 1 build of /gnu/store/m9vvvh5qpkrcd0hra3dpri1yqns9m36w-python-pyyaml-5.4.1.dr= v failed View build log at '/var/log/guix/drvs/m9/vvvh5qpkrcd0hra3dpri1yqns9m36w-pyt= hon-pyyaml-5.4.1.drv.bz2'. guix build: error: build of `/gnu/store/m9vvvh5qpkrcd0hra3dpri1yqns9m36w-py= thon-pyyaml-5.4.1.drv' failed