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Thu, 28 Sep 2023 07:43:02 -0400 Subject: bug#63986: Julia is very slow Resent-From: Efraim Flashner Original-Sender: "Debbugs-submit" Resent-To: bug-guix@gnu.org Resent-Date: Thu, 28 Sep 2023 11:43:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: cc-closed 63986 X-GNU-PR-Package: guix X-GNU-PR-Keywords: patch To: Simon Tournier Cc: Ludovic =?UTF-8?Q?Court=C3=A8s?= , Nicolas Graves , 63986-done@debbugs.gnu.org, csantosb@inventati.org Received: via spool by 63986-done@debbugs.gnu.org id=D63986.16959013296709 (code D ref 63986); Thu, 28 Sep 2023 11:43:02 +0000 Received: (at 63986-done) by debbugs.gnu.org; 28 Sep 2023 11:42:09 +0000 Received: from localhost ([127.0.0.1]:53179 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qlpPD-0001k7-QA for submit@debbugs.gnu.org; Thu, 28 Sep 2023 07:42:09 -0400 Received: from mail-wm1-x335.google.com ([2a00:1450:4864:20::335]:50440) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qlpP7-0001jV-PV for 63986-done@debbugs.gnu.org; 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Thu, 28 Sep 2023 04:41:40 -0700 (PDT) Date: Thu, 28 Sep 2023 14:41:39 +0300 From: Efraim Flashner Message-ID: Mail-Followup-To: Efraim Flashner , Simon Tournier , Ludovic =?UTF-8?Q?Court=C3=A8s?= , 63986-done@debbugs.gnu.org, Nicolas Graves , csantosb@inventati.org References: <87cz1n8lq3.fsf@gmail.com> <871qi24k9z.fsf@inria.fr> <87h6qy71oa.fsf@gmail.com> <87o7kpku0u.fsf@gnu.org> <87jztpqvtz.fsf@gnu.org> <87y1h096s5.fsf@gmail.com> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha256; protocol="application/pgp-signature"; boundary="SaooUKO1mxECwoXM" Content-Disposition: inline In-Reply-To: <87y1h096s5.fsf@gmail.com> X-PGP-Key-ID: 0x41AAE7DCCA3D8351 X-PGP-Key: https://flashner.co.il/~efraim/efraim_flashner.asc X-PGP-Fingerprint: A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: bug-guix-bounces+larch=yhetil.org@gnu.org X-Migadu-Flow: FLOW_IN X-Migadu-Country: US X-Migadu-Scanner: mx0.migadu.com X-Migadu-Spam-Score: -5.34 X-Spam-Score: -5.34 X-Migadu-Queue-Id: 66E1251375 X-TUID: aKH7Tk7hsECH --SaooUKO1mxECwoXM Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable On Wed, Sep 20, 2023 at 05:57:30PM +0200, Simon Tournier wrote: > Hi Efraim, >=20 > Applying the patch is done in v3 of #66030. >=20 > https://issues.guix.gnu.org/issue/66030 >=20 > and QA processed all. >=20 > https://qa.guix.gnu.org/issue/66030/ >=20 > It is almost good except one strong annoyance [1]@ >=20 > --8<---------------cut here---------------start------------->8--- > Singular value decomposition | 57 57 5.0s > Hermitian: Error During Test at /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2n8b0i= b3-julia-genericlinearalgebra-0.2.5/share/julia/loadpath/GenericLinearAlgeb= ra/test/rectfullpacked.jl:12 > Got exception outside of a @test > could not load symbol "dsfrk_64_": > /gnu/store/h5mgc7ar7a05f9rwrd1makhzays5wd3s-julia-1.8.3/bin/../lib/juli= a/liblapack.so: undefined symbol: dsfrk_64_ > Stacktrace: > [1] sfrk!(transr::Char, uplo::Char, trans::Char, alpha::Float64, A::M= atrix{Float64}, beta::Float64, C::Vector{Float64}) > @ GenericLinearAlgebra.LAPACK2 /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2= n8b0ib3-julia-genericlinearalgebra-0.2.5/share/julia/loadpath/GenericLinear= Algebra/src/lapack.jl:523 > [2] Ac_mul_A_RFP(A::Matrix{Float64}, uplo::Symbol) > @ GenericLinearAlgebra /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2n8b0ib3-= julia-genericlinearalgebra-0.2.5/share/julia/loadpath/GenericLinearAlgebra/= src/rectfullpacked.jl:77 > [3] macro expansion > @ /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2n8b0ib3-julia-genericlinearal= gebra-0.2.5/share/julia/loadpath/GenericLinearAlgebra/test/rectfullpacked.j= l:13 [inlined] > [4] macro expansion > @ /gnu/store/h5mgc7ar7a05f9rwrd1makhzays5wd3s-julia-1.8.3/share/jul= ia/stdlib/v1.8/Test/src/Test.jl:1360 [inlined] > [5] macro expansion > @ /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2n8b0ib3-julia-genericlinearal= gebra-0.2.5/share/julia/loadpath/GenericLinearAlgebra/test/rectfullpacked.j= l:13 [inlined] > [6] macro expansion > @ /gnu/store/h5mgc7ar7a05f9rwrd1makhzays5wd3s-julia-1.8.3/share/jul= ia/stdlib/v1.8/Test/src/Test.jl:1436 [inlined] > [7] macro expansion > @ /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2n8b0ib3-julia-genericlinearal= gebra-0.2.5/share/julia/loadpath/GenericLinearAlgebra/test/rectfullpacked.j= l:7 [inlined] > [8] macro expansion > @ /gnu/store/h5mgc7ar7a05f9rwrd1makhzays5wd3s-julia-1.8.3/share/jul= ia/stdlib/v1.8/Test/src/Test.jl:1360 [inlined] > [9] top-level scope > @ /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2n8b0ib3-julia-genericlinearal= gebra-0.2.5/share/julia/loadpath/GenericLinearAlgebra/test/rectfullpacked.j= l:7 > [10] include(fname::String) > @ Base.MainInclude ./client.jl:476 > [11] top-level scope > @ /gnu/store/zkx6p7kz3m5k5w5iy0l1d09b2n8b0ib3-julia-genericlinearal= gebra-0.2.5/share/julia/loadpath/GenericLinearAlgebra/test/runtests.jl:10 > [12] include(mod::Module, _path::String) > @ Base ./Base.jl:419 > [13] exec_options(opts::Base.JLOptions) > @ Base ./client.jl:303 > [14] _start() > @ Base ./client.jl:522 > --8<---------------cut here---------------end--------------->8--- >=20 > Any idea? I have no idea and it is blocking the merge because ~20 > packages are then broken. Well, if we have no idea, I will push the fix > for =E2=80=9CJulia is slow=E2=80=9D and we will fix later these ~20 failu= res. WDYT? This one was easy, I just upgraded it to 0.3.0. Then I had to adjust julia-bandedmatrices and julia-arraylayouts and everything looks good. Except for julia-optim. I spent a few hours trying to get Julia to use accept '64' instead of '64_' for SYMBOLSUFFIX and even packaged a newer version of lapack but I wasn't able to force the issue. Ultimately any other julia packages need to use libblastrampoline to determine whether to use openblas or lapack. Patches pushed, issue closed. I even tested the original reproducer from the first email. --=20 Efraim Flashner =D7=A8=D7=A0=D7=A9=D7=9C=D7=A4 = =D7=9D=D7=99=D7=A8=D7=A4=D7=90 GPG key =3D A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted --SaooUKO1mxECwoXM Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAABCAAdFiEEoov0DD5VE3JmLRT3Qarn3Mo9g1EFAmUVZnAACgkQQarn3Mo9 g1F/lA/+P8UVVANO0DbrmAztwY4w4T2DIPeLm17z7DmTOvYMisLWLzGxDQ1QtH3y KAsoYtdNv45jy/hi7b/HvuhG3KlDHpNYaox/6tql8TWopCjI+ooLXobK1BTNLxRY hF/bZfW3vb1Z0FoxtLgHsxuHQeC5icyTiAgP+nHE2QXi7XL4E2FEGBiOThZTYnoF logD882ShLLPHCGJOceTLq3A+JjvAKgWKu8GyotMD2QD3JRyIbk8BqGBCwOVnFEK 3Q4W2qB/UFe0Mjavlnlj73CrUT+0vQcucZgTkjm/UZsI0lJvW7Oekw+bGSEAAYGE eD/KNy0b3Pi7IclWxW7NkF9JNvU6fejzi+EJHhVOY5DSEEeKrVHQV8Iff2dEZLae 4PtqldVXavB6XdifpCvs0Ef8gPjmlAngvSS8Kyv6Eoigr/RXVGY1W7ZZ4GUgaEII 9owQvmuGJKNPlFTBI/tE0H9TeUgcrGnwBJCfzn6SfQfzcm067OlkSJm2UILxvo0/ KC90L3/J0Xd95jIEDPQXyLXTdW+EmHyBBonQK5YzonmZFb/S3eQtoRmcCbVLdvfJ WDSm4fN+QceT3InYT3T3mvB1GJ/Ar+8fZvipHFiw71/bZV8afaSxnL1MjgF7KkL/ fGVFRku6fwLB50EzJX8giKKPH3A4QcsMiiVKAD5c3uIt1E5evq4= =73Te -----END PGP SIGNATURE----- --SaooUKO1mxECwoXM--