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Thu, 30 Dec 2021 18:56:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:43242) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n35H8-0007RU-E0 for bug-guix@gnu.org; Thu, 30 Dec 2021 18:56:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n35H8-0001eQ-9z for bug-guix@gnu.org; Thu, 30 Dec 2021 18:56:02 -0500 X-Loop: help-debbugs@gnu.org Subject: bug#52906: python-biopython conflicts with python-numpy Resent-From: Leo Famulari Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Thu, 30 Dec 2021 23:56:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 52906 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: zimoun Received: via spool by 52906-submit@debbugs.gnu.org id=B52906.16409085316302 (code B ref 52906); Thu, 30 Dec 2021 23:56:02 +0000 Received: (at 52906) by debbugs.gnu.org; 30 Dec 2021 23:55:31 +0000 Received: from localhost ([127.0.0.1]:54788 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n35Gd-0001da-G5 for submit@debbugs.gnu.org; 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Thu, 30 Dec 2021 18:55:21 -0500 (EST) Date: Thu, 30 Dec 2021 18:55:19 -0500 From: Leo Famulari Message-ID: References: <86o84xpzhv.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: 8bit In-Reply-To: <86o84xpzhv.fsf@gmail.com> X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Ricardo Wurmus , 52906@debbugs.gnu.org Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1640908573; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; 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dmarc=none; spf=pass (aspmx1.migadu.com: domain of "bug-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="bug-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -2.17 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=famulari.name header.s=mesmtp header.b=I4Hk+atH; dkim=fail ("headers rsa verify failed") header.d=messagingengine.com header.s=fm1 header.b="Aixp/ros"; dmarc=none; spf=pass (aspmx1.migadu.com: domain of "bug-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="bug-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 5AB30A364 X-Spam-Score: -2.17 X-Migadu-Scanner: scn1.migadu.com X-TUID: 6a/GXQfVFmG8 On Thu, Dec 30, 2021 at 10:13:48PM +0100, zimoun wrote: > $ guix package -m /tmp/manifest.scm -p /tmp/fail > The following packages will be installed: > python-biopython 1.76 > python-numpy 1.21.3 > > guix package: error: profile contains conflicting entries for python-numpy > guix package: error: first entry: python-numpy@1.21.3 /gnu/store/ggrkk9l67fjn1cj7alr8vx40xv08a6h0-python-numpy-1.21.3 > guix package: error: second entry: python-numpy@1.20.3 /gnu/store/wgsmkn68q8h178sqc7ywjcdr330z9rb6-python-numpy-1.20.3 > guix package: error: ... propagated from python-biopython@1.76 > hint: Try upgrading both `python-numpy' and `python-biopython', or remove one of > them from the profile. > --8<---------------cut here---------------end--------------->8--- See also , "tests/guix-pack-relocatable fails / numpy propagation collision". > I propose to refer as name “python-numpy” the symbol python-numpy which > leads to a consistent scientific Python stack. And to refer as name > “python-numpy-next” the symbol python-numpy-next. Agreed, the stack should be kept consistent.