bug#48090: Issue with itk-snap (vtk-6?)

bug#48090: Issue with itk-snap (vtk-6?)

[Fabio Natali]

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Dear All,

I seem to be having problems with the installation of an image
processing application called ITK-SNAP [0, 1]. This is the error message
I get:

    $ guix environment --pure --ad-hoc itk-snap
    The following derivations will be built:
       /gnu/store/qx7cx3gjqc709gla302yyaggbihq9kw0-itk-snap-3.8.0.drv
       /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv
    building /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv...
    | 'configure' phasebuilder for `/gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv' failed with exit code 1
    build of /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv failed
    View build log at '/var/log/guix/drvs/r3/ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv.bz2'.
    cannot build derivation `/gnu/store/qx7cx3gjqc709gla302yyaggbihq9kw0-itk-snap-3.8.0.drv': 1 dependencies couldn't be built
    guix environment: error: build of `/gnu/store/qx7cx3gjqc709gla302yyaggbihq9kw0-itk-snap-3.8.0.drv' failed

If I understand it correctly, this seems to indicate an underlying
problem with vtk-6. As a matter of fact, this also fails:

    $ guix environment --pure --ad-hoc vtk@6.3.0
    The following derivation will be built:
       /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv
    building /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv...
    - 'configure' phasebuilder for `/gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv' failed with exit code 1
    build of /gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv failed
    View build log at '/var/log/guix/drvs/r3/ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv.bz2'.
    guix environment: error: build of `/gnu/store/r3ndf5r2ck8n5h5sq4phipdvgmv5bagg-vtk-6.3.0.drv' failed

The output of the following command is attached.

    $ bzcat /var/log/guix/drvs/r3/ndf5r2ck8n5h5sq4phipdvgmv5bagg\
    -vtk-6.3.0.drv.bz2 | tail -n 50

Interestingly, a more recent version of vtk seems to install just fine.

    $ guix environment --pure --ad-hoc vtk
    [this works as expected]

It may be worth to mention that I'm running Guix on a foreign
distribution. This is how my guix self-describes itself:

    $ guix describe
      guix 8dcbd8a
        repository URL: https://git.savannah.gnu.org/git/guix.git
        branch: master
        commit: 8dcbd8a374f21f478f0059d4d62e364897e6e667

Is there anything you would suggest I could investigate to solve this?

Many thanks,

Fabio.


- [0] http://www.itksnap.org/
- [1] https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/image-processing.scm?id=8dcbd8a374f21f478f0059d4d62e364897e6e667#n942


-- 
Fabio Natali
https://fabionatali.com

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source directory: "/tmp/guix-build-vtk-6.3.0.drv-0/VTK-6.3.0" (relative from build: "../VTK-6.3.0")
build directory: "/tmp/guix-build-vtk-6.3.0.drv-0/build"
running 'cmake' with arguments ("../VTK-6.3.0" "-DCMAKE_BUILD_TYPE=Release" "-DCMAKE_INSTALL_PREFIX=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DVTK_USE_EXTERNAL=OFF" "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON")
-- The C compiler identification is GNU 7.5.0
-- The CXX compiler identification is GNU 7.5.0
-- Check for working C compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc
-- Check for working C compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++
-- Check for working CXX compiler: /gnu/store/rn75fm7adgx3pw5j8pg3bczfqq1y17lk-gcc-7.5.0/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE
-- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
CMake Error at CMake/vtkCompilerExtras.cmake:47 (if):
  if given arguments:

    "gcc: error: ARGS: No such file or directory

  gcc (GCC) 7.5.0

  Copyright (C) 2017 Free Software Foundation, Inc.

  This is free software" " see the source for copying conditions.  There is
  NO

  warranty" " not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
  PURPOSE.

  

  " "VERSION_GREATER" "4.2.0" "AND" "BUILD_SHARED_LIBS" "AND"
  "HAVE_GCC_VISIBILITY" "AND" "VTK_USE_GCC_VISIBILITY" "AND" "NOT" "MINGW"
  "AND" "NOT" "CYGWIN"

  Unknown arguments specified
Call Stack (most recent call first):
  CMakeLists.txt:283 (include)


-- Configuring incomplete, errors occurred!
See also "/tmp/guix-build-vtk-6.3.0.drv-0/build/CMakeFiles/CMakeOutput.log".
command "cmake" "../VTK-6.3.0" "-DCMAKE_BUILD_TYPE=Release" "-DCMAKE_INSTALL_PREFIX=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=TRUE" "-DCMAKE_INSTALL_RPATH=/gnu/store/lpl2jjhy2yd4ipqasvw9frb6a2i7xnr3-vtk-6.3.0/lib" "-DCMAKE_VERBOSE_MAKEFILE=ON" "-DVTK_USE_EXTERNAL=OFF" "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON" "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON" failed with status 1