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Sat, 28 Jan 2023 08:46:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1pLlWs-0005gu-Lp for bug-guix@gnu.org; Sat, 28 Jan 2023 08:46:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1pLlWs-0007hj-4T for bug-guix@gnu.org; Sat, 28 Jan 2023 08:46:02 -0500 X-Loop: help-debbugs@gnu.org Subject: bug#61121: Cannot import IJulia in Julia Resent-From: Theodore Ehrenborg Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Sat, 28 Jan 2023 13:46:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 61121 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 61121@debbugs.gnu.org X-Debbugs-Original-To: bug-guix@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.167491355929596 (code B ref -1); Sat, 28 Jan 2023 13:46:01 +0000 Received: (at submit) by debbugs.gnu.org; 28 Jan 2023 13:45:59 +0000 Received: from localhost ([127.0.0.1]:39899 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1pLlWp-0007hI-2l for submit@debbugs.gnu.org; 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charset="UTF-8" Hi Guix, I would like to run a Jupyter notebook using Julia, so I need to install the IJulia backend: guix install julia julia # Enter julia REPL ] # To go into the julia pkg REPL add IJulia # Now type backspace to go to julia REPL using IJulia This produces the error: [ Info: Precompiling IJulia [7073ff75-c697-5162-941a-fcdaad2a7d2a] ERROR: LoadError: InitError: SystemError: opening file "/gnu/store/npj8z0g9nx14wl22yphqfs2c5w4qk5jk-julia-1.8.3/share/julia/cert.pem": No such file or directory The full error message is here: https://pastebin.com/qC8yyHXT I saw a very similar bug on Gentoo: Without this file (which can be a symbolic link to `/etc/ssl/certs/ca-certificates.crt`) many Julia 1.8.3 packages, e.g. `HTTP`, do not work. This is what happens: julia> import HTTP [ Info: Precompiling HTTP [cd3eb016-35fb-5094-929b-558a96fad6f3] ERROR: LoadError: InitError: SystemError: opening file "/usr/share/julia/cert.pem": (https://bugs.gentoo.org/888978) Any help would be greatly appreciated. Best regards, Theodore Ehrenborg --000000000000cb79fd05f35332e8 Content-Type: text/html; charset="UTF-8"

Hi Guix,

I would like to run a Jupyter notebook using Julia, so I need to install the IJulia backend: 

guix install julia
julia # Enter julia REPL
] # To go into the julia pkg REPL
add IJulia
# Now type backspace to go to julia REPL
using IJulia

This produces the error: 

[ Info: Precompiling IJulia [7073ff75-c697-5162-941a-fcdaad2a7d2a]
ERROR: LoadError: InitError: SystemError: opening file "/gnu/store/npj8z0g9nx14wl22yphqfs2c5w4qk5jk-julia-1.8.3/share/julia/cert.pem": No such file or directory

The full error message is here: https://pastebin.com/qC8yyHXT

I saw a very similar bug on Gentoo: 

Without this file (which can be a symbolic link to `/etc/ssl/certs/ca-certificates.crt`) many Julia 1.8.3 packages, e.g. `HTTP`, do not work.
This is what happens:

julia> import HTTP
[ Info: Precompiling HTTP [cd3eb016-35fb-5094-929b-558a96fad6f3]
ERROR: LoadError: InitError: SystemError: opening file "/usr/share/julia/cert.pem":

(https://bugs.gentoo.org/888978)

Any help would be greatly appreciated.

Best regards,
Theodore Ehrenborg

--000000000000cb79fd05f35332e8--