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Fri, 31 Dec 2021 07:45:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:43840) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n3HHJ-0000Fx-SV for bug-guix@gnu.org; Fri, 31 Dec 2021 07:45:01 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n3HHJ-00055n-PY for bug-guix@gnu.org; Fri, 31 Dec 2021 07:45:01 -0500 X-Loop: help-debbugs@gnu.org Subject: bug#52906: python-biopython conflicts with python-numpy Resent-From: Ricardo Wurmus Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Fri, 31 Dec 2021 12:45:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 52906 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: zimoun X-Debbugs-Original-Cc: debbugs-submit@debbugs.gnu.org, 52906@debbugs.gnu.org Received: via spool by 52906-submit@debbugs.gnu.org id=B52906.164095466219490 (code B ref 52906); Fri, 31 Dec 2021 12:45:01 +0000 Received: (at 52906) by debbugs.gnu.org; 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dmarc=none; spf=pass (aspmx1.migadu.com: domain of "bug-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="bug-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 31FFD337B8 X-Spam-Score: -2.08 X-Migadu-Scanner: scn0.migadu.com X-TUID: pRpO1Vj6IX/8 zimoun writes: > Hi Ricardo, > > On Fri, 31 Dec 2021 at 11:18, Ricardo Wurmus wrote: >> zimoun writes: > >> Back then we reverted to numpy 1.20.x as the default because of numba, >> which did not work with 1.21. I=E2=80=99m now upgrading numba (and llvm= lite) to >> a more recent release candidate, which should bring compatibility with >> numpy 1.21. >> >> If that works we=E2=80=99ll make python-numpy-next the new python-numpy. > > I think that it could nice to have "python-numpy-next". Now, because > we are right after a core-updates, the last Numpy version and the one > we use as scientific Python stack are really close. But it will not > necessary the case between 2 core-updates merges. Well, my point is > to have the core-updates package python-numpy used by all the > scientific Python stack and the leaf package python-numpy-next where > updates can happen on master, it can be used with transformations > etc., especially by scientific Python developper. Yes, it=E2=80=99s a good idea to have it anyway. I just realized that switching over to the new numpy is going to cause more than a 1000 rebuilds. So I=E2=80=99ll apply your patch on the master branch and build out the numpy upgrade on a separate branch. Thank you! --=20 Ricardo