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* bug#44256: “guix import cran -a bioconductor FOO” downloads twice
@ 2020-10-27 13:55 zimoun
  2021-02-25 15:28 ` zimoun
  2024-11-29 18:35 ` Ricardo Wurmus
  0 siblings, 2 replies; 3+ messages in thread
From: zimoun @ 2020-10-27 13:55 UTC (permalink / raw)
  To: 44256

Dear,

--8<---------------cut here---------------start------------->8---
$ guix import cran -a bioconductor CATALYST

Starting download of /tmp/guix-file.OPtOW1
From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
 …12.2.tar.gz  10.2MiB                567KiB/s 00:18 [##################] 100.0%

Starting download of /tmp/guix-file.V6sC1Z
From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
 …12.2.tar.gz  10.2MiB                565KiB/s 00:19 [##################] 100.0%
--8<---------------cut here---------------end--------------->8---

I have not investigated more, if the issue is from the importer or from
the information provided by Bioconductor.


All the best,
simon




^ permalink raw reply	[flat|nested] 3+ messages in thread

* bug#44256: “guix import cran -a bioconductor FOO” downloads twice
  2020-10-27 13:55 bug#44256: “guix import cran -a bioconductor FOO” downloads twice zimoun
@ 2021-02-25 15:28 ` zimoun
  2024-11-29 18:35 ` Ricardo Wurmus
  1 sibling, 0 replies; 3+ messages in thread
From: zimoun @ 2021-02-25 15:28 UTC (permalink / raw)
  To: 44256

Hi,

On Tue, 27 Oct 2020 at 14:55, zimoun <zimon.toutoune@gmail.com> wrote:

> $ guix import cran -a bioconductor CATALYST
>
> Starting download of /tmp/guix-file.OPtOW1
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
>  …12.2.tar.gz  10.2MiB                567KiB/s 00:18 [##################] 100.0%
>
> Starting download of /tmp/guix-file.V6sC1Z
>>From https://bioconductor.org/packages/release/bioc/src/contrib/CATALYST_1.12.2.tar.gz...
>  …12.2.tar.gz  10.2MiB                565KiB/s 00:19 [##################] 100.0%
>
> I have not investigated more, if the issue is from the importer or from
> the information provided by Bioconductor.

It comes from ’cran->guix-package’ in (guix import cran):

--8<---------------cut here---------------start------------->8---
     (let ((description (fetch-description repo package-name)))
       (if description
           (description->package repo description)
--8<---------------cut here---------------end--------------->8---

where ’fetch-description’ effectively downloads but then
’description->package’ downloads again:

--8<---------------cut here---------------start------------->8---
         (source     (download source-url #:method (cond
                                                    (git? 'git)
                                                    (hg? 'hg)
                                                    (else #f))))
--8<---------------cut here---------------end--------------->8---

This second download is not necessary.  The fix needs some care with the
different repositories.


Cheers,
simon









^ permalink raw reply	[flat|nested] 3+ messages in thread

* bug#44256: “guix import cran -a bioconductor FOO” downloads twice
  2020-10-27 13:55 bug#44256: “guix import cran -a bioconductor FOO” downloads twice zimoun
  2021-02-25 15:28 ` zimoun
@ 2024-11-29 18:35 ` Ricardo Wurmus
  1 sibling, 0 replies; 3+ messages in thread
From: Ricardo Wurmus @ 2024-11-29 18:35 UTC (permalink / raw)
  To: 44256

Fixed with commit 64d9c7ea3fec163d86dde933471594ef2fe8c356 (on r-team
branch).  This will soon be rebased on top of the master branch and
merged.

-- 
Ricardo




^ permalink raw reply	[flat|nested] 3+ messages in thread

end of thread, other threads:[~2024-11-29 18:36 UTC | newest]

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2020-10-27 13:55 bug#44256: “guix import cran -a bioconductor FOO” downloads twice zimoun
2021-02-25 15:28 ` zimoun
2024-11-29 18:35 ` Ricardo Wurmus

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