From mboxrd@z Thu Jan 1 00:00:00 1970 From: Marius Bakke Subject: bug#25177: python-tests: python-oslosphinx fixed. Please evaluate. Date: Fri, 24 Feb 2017 23:36:58 +0100 Message-ID: <87tw7jfc6t.fsf@kirby.i-did-not-set--mail-host-address--so-tickle-me> References: <20170218181854.49ea3b17@scratchpost.org> <87bmtxkcqi.fsf@kirby.i-did-not-set--mail-host-address--so-tickle-me> <20170221041645.GC19762@jasmine> <87h93oyod0.fsf@elephly.net> <87zihfxxi3.fsf@elephly.net> <20170221174756.GA6450@jasmine> <87wpcjxka7.fsf@elephly.net> <87lgsybdnq.fsf@elephly.net> <87wpcffcxh.fsf@kirby.i-did-not-set--mail-host-address--so-tickle-me> <87y3wvxlwu.fsf@elephly.net> Mime-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:46400) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1chOV4-0005m4-Pc for bug-guix@gnu.org; Fri, 24 Feb 2017 17:38:07 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1chOV0-0003UQ-Gj for bug-guix@gnu.org; Fri, 24 Feb 2017 17:38:06 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:56814) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1chOV0-0003UE-8h for bug-guix@gnu.org; Fri, 24 Feb 2017 17:38:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1chOUz-0006SG-WC for bug-guix@gnu.org; Fri, 24 Feb 2017 17:38:02 -0500 Sender: "Debbugs-submit" Resent-Message-ID: In-Reply-To: <87y3wvxlwu.fsf@elephly.net> List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+gcggb-bug-guix=m.gmane.org@gnu.org Sender: "bug-Guix" To: Ricardo Wurmus Cc: 25177@debbugs.gnu.org --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Ricardo Wurmus writes: > Marius Bakke writes: > >> Ricardo Wurmus writes: >> >>> Ricardo Wurmus writes: >>> >>>> Leo Famulari writes: >>>> >>>>> On Tue, Feb 21, 2017 at 06:30:12PM +0100, Ricardo Wurmus wrote: >>>>>> From 1ac5166df11766b47cd1ac723a464063a89afc96 Mon Sep 17 00:00:00 20= 01 >>>>>> From: Ricardo Wurmus >>>>>> Date: Tue, 21 Feb 2017 18:28:21 +0100 >>>>>> Subject: [PATCH] gnu: python-dendropy: Disable failing tests. >>>>>> >>>>>> * gnu/packages/bioinformatics.scm (python-dendropy): Disable two fai= ling >>>>>> tests. >>>>> >>>>> LGTM >>>> >>>> The problem was fixed in the upstream commit 93f984b in response to my >>>> bug report: >>>> >>>> https://github.com/jeetsukumaran/DendroPy/commit/93f984bba7a6c588a= 28ca87f4e557ce283809453 >>>> >>>> I believe we can just backport this fix instead of deleting the test. >>> >>> Here=E2=80=99s a patch that fixes the tests by applying the changes of = the >>> upstream commit. If this is fine I=E2=80=99ll push it to the python-te= sts >>> branch. >> >> I tried this patch, and guess the reason it was not pushed is because >> dendropy now has a different failure. Can you look into it? > > Oh? I didn=E2=80=99t get an error building it on the =E2=80=9Cpython-tes= ts=E2=80=9D branch on > x86_64. Could you show me the error messages you get? > > (I didn=E2=80=99t build python2-dendropy.) Strange. Here python2-dendropy builds fine, but python-dendropy fails: =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D FAIL: test_collection_comments_and_annotations (dendropy.test.test_dataio_n= exml_reader_tree_list.NexmlStandardTreeParsingTestCase) =2D--------------------------------------------------------------------- Traceback (most recent call last): File "/tmp/guix-build-python-dendropy-4.2.0.drv-0/DendroPy-4.2.0/dendropy= /test/test_dataio_nexml_reader_tree_list.py", line 60, in test_collection_c= omments_and_annotations expected_metadata) File "/tmp/guix-build-python-dendropy-4.2.0.drv-0/DendroPy-4.2.0/dendropy= /test/support/standard_file_test_trees.py", line 127, in compare_annotation= s_to_json_metadata_dict self.assertEqual(item_annotations_as_dict, expected_metadata) AssertionError: {'$_demivotary_#_monumentlike': 31, 'mangan[226 chars]alse}= !=3D {'Merycoidodon_%_$_permeant': 'envyingly247[236 chars]'31'} Diff is 711 characters long. Set self.maxDiff to None to see it. =2D--------------------------------------------------------------------- Ran 840 tests in 263.965s FAILED (failures=3D1) phase `check' failed after 266.1 seconds builder for `/gnu/store/af6rm6s8g3cid461pvhl1j0fsyp06ifq-python-dendropy-4.= 2.0.drv' failed with exit code 1 --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEu7At3yzq9qgNHeZDoqBt8qM6VPoFAliwtYoACgkQoqBt8qM6 VPowUwgAmVxwfIcrjeWnCITuxjApmbOZITKtNlVy3ZSDVdE6MVYXbr3V6skWO4J3 nWdxlFsutybHnWVXRJk7L95CV8GUo65MHi7MUoWutlSReKpBYbU2lzSrZ9jRZkNl 5Zj4wx7BYIG8+c6UugvsGRvL0UhYM4s4cFCKgrmcyGOzKyxS/2R9+tIkzSRT28L3 57ItlHc3mT3cRvHI9WzhWOktQq5Tv6Mu2hrSkwXMfBa3qJekGSYeLNtvbyrAA9zN pl42ypCG/hmm1L8DePP6leG9sU9Zk6OVONLQiYEMcDEzPxp4g0y+Bdd8JqYgIpnK ndMs0NexGH78eI+Q2t4ZhvXMrnhRCA== =rWzp -----END PGP SIGNATURE----- --=-=-=--