From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id Aox5JosJomGaSgEAgWs5BA (envelope-from ) for ; Sat, 27 Nov 2021 11:33:47 +0100 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id kLqOIYsJomEubgAAB5/wlQ (envelope-from ) for ; Sat, 27 Nov 2021 10:33:47 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 46CBC3303E for ; Sat, 27 Nov 2021 11:33:47 +0100 (CET) Received: from localhost ([::1]:55700 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mqv1e-0003jL-Dt for larch@yhetil.org; Sat, 27 Nov 2021 05:33:46 -0500 Received: from eggs.gnu.org ([209.51.188.92]:48460) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mqupK-0008QF-SC for bug-guix@gnu.org; Sat, 27 Nov 2021 05:21:03 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:49699) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1mqupK-0006Hc-Io for bug-guix@gnu.org; Sat, 27 Nov 2021 05:21:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1mqupK-0004xm-3a for bug-guix@gnu.org; Sat, 27 Nov 2021 05:21:02 -0500 X-Loop: help-debbugs@gnu.org Subject: bug#52139: jupyter trying to modify /gnu/store Resent-From: Alexander Asteroth Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Sat, 27 Nov 2021 10:21:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 52139 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 52139@debbugs.gnu.org X-Debbugs-Original-To: bug-guix@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.163800842319011 (code B ref -1); Sat, 27 Nov 2021 10:21:01 +0000 Received: (at submit) by debbugs.gnu.org; 27 Nov 2021 10:20:23 +0000 Received: from localhost ([127.0.0.1]:33012 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mquob-0004wT-Kf for submit@debbugs.gnu.org; Sat, 27 Nov 2021 05:20:23 -0500 Received: from lists.gnu.org ([209.51.188.17]:51992) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1mquoZ-0004wK-VF for submit@debbugs.gnu.org; Sat, 27 Nov 2021 05:20:16 -0500 Received: from eggs.gnu.org ([209.51.188.92]:48320) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mquoZ-0007Wy-QG for bug-guix@gnu.org; Sat, 27 Nov 2021 05:20:15 -0500 Received: from sv-2s11.infcs.de ([194.95.66.48]:38512 helo=ux-2s-mailproxy.inf.h-brs.de) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mquoU-00066Q-89 for bug-guix@gnu.org; Sat, 27 Nov 2021 05:20:14 -0500 Received: from condor.h-brs.de (p5797302f.dip0.t-ipconnect.de [87.151.48.47]) (authenticated bits=0) by ux-2s-mailproxy.inf.h-brs.de (8.15.2/8.15.2/Debian-8ska0) with ESMTPSA id 1ARAK3sQ032124 (version=TLSv1.2 cipher=ECDHE-RSA-AES256-GCM-SHA384 bits=256 verify=NOT) for ; Sat, 27 Nov 2021 11:20:03 +0100 User-agent: mu4e 1.6.10; emacs 27.2 From: Alexander Asteroth Date: Sat, 27 Nov 2021 11:14:07 +0100 Message-ID: <87pmqlq4s1.fsf@h-brs.de> MIME-Version: 1.0 Content-Type: text/plain X-Auth: by SMTP AUTH @ ux-2s11 X-MIMEDefang-Info-ge: Gescannt in Inf@FH-BRS, Regeln s. MiniFAQ E-Mail/Mailscanner X-Scanned-By: MIMEDefang @ FB02 @ H-BRS Received-SPF: pass client-ip=194.95.66.48; envelope-from=alexander.asteroth@h-brs.de; helo=ux-2s-mailproxy.inf.h-brs.de X-Spam_score_int: -18 X-Spam_score: -1.9 X-Spam_bar: - X-Spam_report: (-1.9 / 5.0 requ) BAYES_00=-1.9, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Mailman-Approved-At: Sat, 27 Nov 2021 05:33:38 -0500 X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1638009227; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-type:content-type:resent-cc:resent-from:resent-sender: resent-message-id:list-id:list-help:list-unsubscribe:list-subscribe: list-post; bh=wTsWtBFxJxfoKCBWzxe7NPMqzYSEiqZ56dGMI+MUvoY=; b=YKsdLjVS1OiXYFPGpp6KbdvfDJ+VJGez/vC0lMJvsEkZ3Vm6iJhZ+WZQsbcg4wKnVGuolL U1cw017oYB9XvvT+4G2gycDB/olQMFvByuDwtN1sC1HP8HA1P94QuHrnXCNuPs9DR4HCB5 g1FiEOV3OeHUcjkePHjLojfwnVzIqE3iE/pOH9Pac6LdKmqan1bSr9orjmA4zL+0RqSdkU 71z3FXDpGBSL7ixuLRW1NaISvyt4JxgnbeVYBg1SeeviTszeNU8n6vFhysFx92Ynz89G6h /JOvxbVPEYy+xWzduA5BxTNSD+uqQgEhEffPxJGHO/epi4MoJHcqenK9ze1jeA== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1638009227; a=rsa-sha256; cv=none; b=t8IMYuTQ6XnMZvAwdc1JmBBJwtJ2WWAGeTL/2VdkS6dZ5mrg59sXJ/8KvrIXTslaKXnU1o O9Jz8b3wqBmZ1smfn5EAWfHFvnFyzaKW+fv/1pH9tveKSjO6HXe5d7sBm6cC72GULkuIrO RMpCjzE1F3uOwkLmNBxhmy9E4UsN4d7tvLig7iPCMh2oxDAv6hCObxTu9C4M+u486wGonW 2uMUQ4dN7UtPbhEKla88va3B/Os1+JYvYhxF6Q6zLRzcZHKNsgPi9kVy3k5LWrTb5rV9PH dy9KFsv/DEU0xl2kp/VvCJWM15lc2I2UEvGYoPe5T3Owcv56IVEngGbfwRb66A== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=none; dmarc=fail reason="SPF not aligned (relaxed), No valid DKIM" header.from=h-brs.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "bug-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="bug-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -3.00 Authentication-Results: aspmx1.migadu.com; dkim=none; dmarc=fail reason="SPF not aligned (relaxed), No valid DKIM" header.from=h-brs.de (policy=none); spf=pass (aspmx1.migadu.com: domain of "bug-guix-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="bug-guix-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 46CBC3303E X-Spam-Score: -3.00 X-Migadu-Scanner: scn0.migadu.com X-TUID: YasncQflsd09 Dear all, yesterday I added jupyter to my profile and it worked perfectly fine. Overnight I shut down the computer and rebooted today. Now jupyter refuses to start with the messages below. It seems that jupyter-notebook tries to create directories (or modifiy them) in the location it is installed wich is mounted ro. I have no idea why this didn't happen yesterday but it seems that there is some misconfiguration somewhere... Cheers, Alex PS: same effect with jupyterlab from the guix-science channel. ------------------------------- ~$ jupyter-notebook Traceback (most recent call last): File "/gnu/store/1v8dgchnis87a4p3g9i3j1ayv0dfr4ds-python-notebook-6.3.0/bin/.jupyter-notebook-real", line 11, in load_entry_point('notebook==6.3.0', 'console_scripts', 'jupyter-notebook')() File "/gnu/store/8ncan0ipzb240h23fwfspdhrzkzdw277-python-jupyter-core-4.7.1/lib/python3.8/site-packages/jupyter_core/application.py", line 254, in launch_instance return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs) File "/gnu/store/i037rnmqzwcc7nrgcswzb8dcckfrngzp-python-traitlets-4.3.3/lib/python3.8/site-packages/traitlets/config/application.py", line 663, in launch_instance app.initialize(argv) File "/gnu/store/f7y0fd230nc6l2qwq58g7q26rlkwjkf3-python-decorator-5.0.9/lib/python3.8/site-packages/decorator.py", line 232, in fun return caller(func, *(extras + args), **kw) File "/gnu/store/i037rnmqzwcc7nrgcswzb8dcckfrngzp-python-traitlets-4.3.3/lib/python3.8/site-packages/traitlets/config/application.py", line 87, in catch_config_error return method(app, *args, **kwargs) File "/gnu/store/1v8dgchnis87a4p3g9i3j1ayv0dfr4ds-python-notebook-6.3.0/lib/python3.8/site-packages/notebook/notebookapp.py", line 2122, in initialize super().initialize(argv) File "/gnu/store/f7y0fd230nc6l2qwq58g7q26rlkwjkf3-python-decorator-5.0.9/lib/python3.8/site-packages/decorator.py", line 232, in fun return caller(func, *(extras + args), **kw) File "/gnu/store/i037rnmqzwcc7nrgcswzb8dcckfrngzp-python-traitlets-4.3.3/lib/python3.8/site-packages/traitlets/config/application.py", line 87, in catch_config_error return method(app, *args, **kwargs) File "/gnu/store/8ncan0ipzb240h23fwfspdhrzkzdw277-python-jupyter-core-4.7.1/lib/python3.8/site-packages/jupyter_core/application.py", line 229, in initialize self.migrate_config() File "/gnu/store/8ncan0ipzb240h23fwfspdhrzkzdw277-python-jupyter-core-4.7.1/lib/python3.8/site-packages/jupyter_core/application.py", line 155, in migrate_config migrate() File "/gnu/store/8ncan0ipzb240h23fwfspdhrzkzdw277-python-jupyter-core-4.7.1/lib/python3.8/site-packages/jupyter_core/migrate.py", line 244, in migrate ensure_dir_exists(env['jupyter_config']) File "/gnu/store/8ncan0ipzb240h23fwfspdhrzkzdw277-python-jupyter-core-4.7.1/lib/python3.8/site-packages/jupyter_core/utils/__init__.py", line 11, in ensure_dir_exists os.makedirs(path, mode=mode) File "/gnu/store/sd2ic7bpv8fx3imy1j8xcjclx71sv6q0-python-3.8.2/lib/python3.8/os.py", line 213, in makedirs makedirs(head, exist_ok=exist_ok) File "/gnu/store/sd2ic7bpv8fx3imy1j8xcjclx71sv6q0-python-3.8.2/lib/python3.8/os.py", line 213, in makedirs makedirs(head, exist_ok=exist_ok) File "/gnu/store/sd2ic7bpv8fx3imy1j8xcjclx71sv6q0-python-3.8.2/lib/python3.8/os.py", line 213, in makedirs makedirs(head, exist_ok=exist_ok) [Previous line repeated 7 more times] File "/gnu/store/sd2ic7bpv8fx3imy1j8xcjclx71sv6q0-python-3.8.2/lib/python3.8/os.py", line 223, in makedirs mkdir(name, mode) OSError: [Errno 30] Read-only file system: '/home/[user]/.guix-profile/etc/jupyter:'