From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp0 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id mJqKEDcrAWFP1wAAgWs5BA (envelope-from ) for ; Wed, 28 Jul 2021 12:02:31 +0200 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp0 with LMTPS id AJ5uDDcrAWFtbQAA1q6Kng (envelope-from ) for ; Wed, 28 Jul 2021 10:02:31 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 6C15F1EF77 for ; Wed, 28 Jul 2021 12:02:30 +0200 (CEST) Received: from localhost ([::1]:52978 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1m8gOT-0002jq-Gd for larch@yhetil.org; Wed, 28 Jul 2021 06:02:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:37872) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1m8gO3-0002jZ-9c for bug-guix@gnu.org; Wed, 28 Jul 2021 06:02:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:43157) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1m8gO2-0002EQ-J8 for bug-guix@gnu.org; Wed, 28 Jul 2021 06:02:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1m8gO2-0008Um-HM for bug-guix@gnu.org; Wed, 28 Jul 2021 06:02:02 -0400 X-Loop: help-debbugs@gnu.org Subject: bug#49439: grafts cause =?UTF-8?Q?=E2=80=9Cguix_?= =?UTF-8?Q?environment=E2=80=9D?= to get killed with OOM Resent-From: Ludovic =?UTF-8?Q?Court=C3=A8s?= Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Wed, 28 Jul 2021 10:02:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 49439 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: Sarah Morgensen Received: via spool by 49439-submit@debbugs.gnu.org id=B49439.162746646932592 (code B ref 49439); Wed, 28 Jul 2021 10:02:02 +0000 Received: (at 49439) by debbugs.gnu.org; 28 Jul 2021 10:01:09 +0000 Received: from localhost ([127.0.0.1]:54703 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m8gN8-0008TY-UM for submit@debbugs.gnu.org; Wed, 28 Jul 2021 06:01:09 -0400 Received: from eggs.gnu.org ([209.51.188.92]:39844) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1m8gMs-0008Si-GW for 49439@debbugs.gnu.org; Wed, 28 Jul 2021 06:01:05 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]:49768) by eggs.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1m8gMl-00015D-9Y; Wed, 28 Jul 2021 06:00:43 -0400 Received: from [2a01:e0a:1d:7270:af76:b9b:ca24:c465] (port=45318 helo=ribbon) by fencepost.gnu.org with esmtpsa (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1m8gMl-0003Ey-1T; Wed, 28 Jul 2021 06:00:43 -0400 From: Ludovic =?UTF-8?Q?Court=C3=A8s?= References: <87sg0rse1n.fsf@elephly.net> <86tuklr5g6.fsf@mgsn.dev> <87y29r3enb.fsf@gnu.org> <867dhbpbyt.fsf@mgsn.dev> Date: Wed, 28 Jul 2021 12:00:39 +0200 In-Reply-To: <867dhbpbyt.fsf@mgsn.dev> (Sarah Morgensen's message of "Tue, 27 Jul 2021 16:35:06 -0700") Message-ID: <87k0la3ghk.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.2 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Ricardo Wurmus , 49439@debbugs.gnu.org Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1627466551; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post; bh=4p4i2EYT1epPgRT1jkYp1Z30RRipuAp9EVXGlpI/70U=; b=EHMG+GKdFIGACBbTkkiynA0CvxFY/U9keCYjudY1o/KwdxHLSM92V+6/wf5LPzIGFC1wUh ae6MGPglmDnbXmfzh4sZlaYW/p/pp3NE7dKT9jFTLMLPhwRNVt9Xse8pFv2fzSBleSEavM Uzz3OajNO3oTgdu8ZjPxbASC1oGPf5O7U+RNGznt39H2XAk8r907+em+bU/CSWRqm6wlKP OJn7mdAocQoC4XTPDItVDGO7his342SSAQAxrIj4sNfbv7mm3blYGLR/eh5/HYhSHGXdwL vf3TpaTjCk8waJln/7VsZCiA7QcHBVBPjrUtZzoStg4BTgY5lyrVztadoD3LGg== ARC-Seal: i=1; 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The only I thing I can think of is that > I didn't have everything in the store first. Is there a way I can prune > just the relevant items from the store to test this? You could try something like: guix gc -D $(guix gc --references $(guix build pigx-scrnaseq)) \ $(guix gc --references $(guix build pigx-scrnaseq --no-grafts)) Thinking about it, the grafts code depends on what=E2=80=99s in the store: = when nothing is in the store, it bounces to the =E2=80=9Cbuild handler=E2=80=9D,= which accumulates the list of missing store items, until it starts building them. Let=E2=80=99s see if I can reproduce that behavior, too=E2=80=A6 Thanks, Ludo=E2=80=99.