From: Ricardo Wurmus <rekado@elephly.net>
To: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Cc: 42141@debbugs.gnu.org
Subject: bug#42141: blast+ is not reproducible
Date: Thu, 29 Sep 2022 11:32:05 +0200 [thread overview]
Message-ID: <87czbesewx.fsf@elephly.net> (raw)
In-Reply-To: <87h70qsf9m.fsf@elephly.net>
Ricardo Wurmus <rekado@elephly.net> writes:
> reopen 42141
> thanks
>
> Maxim Cournoyer <maxim.cournoyer@gmail.com> writes:
>
>> Hi,
>>
>> Ricardo Wurmus <rekado@elephly.net> writes:
>>
>>> This should be rather easy to fix:
>>>
>>> diff -r
>>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include
>>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check
>>> diff -r
>>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h
>>> /gnu/store/3y97kfanv9ynxnahyykixchlbpbyvjmm-blast+-2.10.1-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h
>>> 4,13c4,13
>>> < #define NCBI_RANDOM_VALUE_0 1770246234u
>>> < #define NCBI_RANDOM_VALUE_1 2685550394u
>>> < #define NCBI_RANDOM_VALUE_2 1952513968u
>>> < #define NCBI_RANDOM_VALUE_3 4081691487u
>>> < #define NCBI_RANDOM_VALUE_4 1126642990u
>>> < #define NCBI_RANDOM_VALUE_5 2363626105u
>>> < #define NCBI_RANDOM_VALUE_6 444644742u
>>> < #define NCBI_RANDOM_VALUE_7 2799580837u
>>> < #define NCBI_RANDOM_VALUE_8 216161479u
>>> < #define NCBI_RANDOM_VALUE_9 992434062u
>>> ---
>>>> #define NCBI_RANDOM_VALUE_0 2851596927u
>>>> #define NCBI_RANDOM_VALUE_1 4039058594u
>>>> #define NCBI_RANDOM_VALUE_2 3204116600u
>>>> #define NCBI_RANDOM_VALUE_3 4270143185u
>>>> #define NCBI_RANDOM_VALUE_4 1366873742u
>>>> #define NCBI_RANDOM_VALUE_5 703144487u
>>>> #define NCBI_RANDOM_VALUE_6 2507785646u
>>>> #define NCBI_RANDOM_VALUE_7 3995716134u
>>>> #define NCBI_RANDOM_VALUE_8 907933519u
>>>> #define NCBI_RANDOM_VALUE_9 1149060107u
>>
>> Not anymore, according to:
>>
>> $ guix challenge blast+
>>
>> 1 store items were analyzed:
>> - 1 (100.0%) were identical
>> - 0 (0.0%) differed
>> - 0 (0.0%) were inconclusive
>
> This is still a problem:
>
> $ diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check
> diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h
> --- /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h 1970-01-01 01:00:01.000000000 +0100
> +++ /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbiconf_unix.h 1970-01-01 01:00:01.000000000 +0100
> @@ -1095,7 +1095,7 @@
>
> /* Build signature: compiler-name '_' compiler-version '-' configuration '--'
> platform-name '-' hostname */
> -#define NCBI_SIGNATURE "GCC_1030-DebugMTDLL64--x86_64-unknown-linux5.15.10-gnu2.33-localhost"
> +#define NCBI_SIGNATURE "GCC_1030-DebugMTDLL64--x86_64-unknown-linux5.15.59-gnu2.33-localhost"
>
> /* Define to 1 if SQLColAttribute's last argument is an SQLLEN * */
> #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1
> diff -ru /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h
> --- /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h 1970-01-01 01:00:01.000000000 +0100
> +++ /gnu/store/0kbsdr61qpj0vkc6s8g2kbp4dq936n0p-blast+-2.11.0-include-check/include/ncbi-tools++/ncbi-tools++/ncbi_random_macro.h 1970-01-01 01:00:01.000000000 +0100
> @@ -1,13 +1,13 @@
> #define NCBI_RANDOM_VALUE_TYPE Uint4
> #define NCBI_RANDOM_VALUE_MIN 0
> #define NCBI_RANDOM_VALUE_MAX 0xffffffffu
> -#define NCBI_RANDOM_VALUE_0 3249030781u
> -#define NCBI_RANDOM_VALUE_1 3573796697u
> -#define NCBI_RANDOM_VALUE_2 2130009325u
> -#define NCBI_RANDOM_VALUE_3 4284761029u
> -#define NCBI_RANDOM_VALUE_4 3467737853u
> -#define NCBI_RANDOM_VALUE_5 3267844710u
> -#define NCBI_RANDOM_VALUE_6 4107058373u
> -#define NCBI_RANDOM_VALUE_7 166436459u
> -#define NCBI_RANDOM_VALUE_8 960927418u
> -#define NCBI_RANDOM_VALUE_9 3839848519u
> +#define NCBI_RANDOM_VALUE_0 2845495105u
> +#define NCBI_RANDOM_VALUE_1 2158634051u
> +#define NCBI_RANDOM_VALUE_2 4072202242u
> +#define NCBI_RANDOM_VALUE_3 902228395u
> +#define NCBI_RANDOM_VALUE_4 1353323915u
> +#define NCBI_RANDOM_VALUE_5 574823513u
> +#define NCBI_RANDOM_VALUE_6 4119501261u
> +#define NCBI_RANDOM_VALUE_7 2477640938u
> +#define NCBI_RANDOM_VALUE_8 2776595395u
> +#define NCBI_RANDOM_VALUE_9 270550684u
These values are generated here:
ncbi-blast-2.11.0+-src/c++/scripts/common/impl/define_random_macros.sh
I don’t know if we can just define them to fixed values; it should be
fine.
Debian also has a patch for other problems including the NCBI_SIGNATURE
value:
https://sources.debian.org/data/main/n/ncbi-blast%2B/2.12.0%2Bds-3/debian/patches/reprobuild
--
Ricardo
next prev parent reply other threads:[~2022-09-29 10:05 UTC|newest]
Thread overview: 10+ messages / expand[flat|nested] mbox.gz Atom feed top
2020-06-30 16:42 bug#42141: blast+ is not reproducible Ricardo Wurmus
2022-09-29 0:35 ` Maxim Cournoyer
2022-09-29 9:24 ` Ricardo Wurmus
2022-09-29 9:32 ` Ricardo Wurmus [this message]
2022-09-29 22:04 ` Ricardo Wurmus
2022-09-30 3:09 ` Maxim Cournoyer
2022-09-30 10:04 ` Ricardo Wurmus
2022-09-30 14:01 ` zimoun
2022-09-30 14:38 ` Ricardo Wurmus
2022-09-30 21:20 ` Maxim Cournoyer
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