unofficial mirror of bug-guix@gnu.org 
 help / color / mirror / code / Atom feed
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
To: 39872@debbugs.gnu.org
Subject: bug#39872: python-anndata fails to build
Date: Mon, 02 Mar 2020 14:29:44 -0500	[thread overview]
Message-ID: <878ski5zdj.fsf@gmail.com> (raw)

Build log extract:

--8<---------------cut here---------------start------------->8---
starting phase `check'
running "python setup.py" with command "test" and parameters ()
running test
running egg_info
writing anndata.egg-info/PKG-INFO
writing dependency_links to anndata.egg-info/dependency_links.txt
writing requirements to anndata.egg-info/requires.txt
writing top-level names to anndata.egg-info/top_level.txt
reading manifest file 'anndata.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'anndata.egg-info/SOURCES.txt'
running build_ext
anndata (unittest.loader._FailedTest) ... ERROR

======================================================================
ERROR: anndata (unittest.loader._FailedTest)
----------------------------------------------------------------------
ImportError: Failed to import test module: anndata
Traceback (most recent call last):
  File "/gnu/store/78w7y0lxar70j512iqw8x3nimzj10yga-python-3.7.4/lib/python3.7/unittest/loader.py", line 470, in _find_test_path
    package = self._get_module_from_name(name)
  File "/gnu/store/78w7y0lxar70j512iqw8x3nimzj10yga-python-3.7.4/lib/python3.7/unittest/loader.py", line 377, in _get_module_from_name
    __import__(name)
  File "/tmp/guix-build-python-anndata-0.6.18.drv-0/anndata-0.6.18/anndata/__init__.py", line 1, in <module>
    from .base import AnnData
  File "/tmp/guix-build-python-anndata-0.6.18.drv-0/anndata-0.6.18/anndata/base.py", line 21, in <module>
    from scipy.sparse.sputils import IndexMixin
ImportError: cannot import name 'IndexMixin' from 'scipy.sparse.sputils' (/gnu/store/fd99znbw3w7k05r8xkm03w1kvpa6yl1w-python-scipy-1.3.2/lib/python3.7/site-packages/scipy/sparse/sputils.py)


----------------------------------------------------------------------
Ran 1 test in 0.000s

FAILED (errors=1)
Test failed: <unittest.runner.TextTestResult run=1 errors=1 failures=0>
error: Test failed: <unittest.runner.TextTestResult run=1 errors=1 failures=0>
command "python" "-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "test" failed with status 1
builder for `/gnu/store/ma6q97h3245r7sxhqms6q1csbkss2wvq-python-anndata-0.6.18.drv' failed with exit code 1
build of /gnu/store/ma6q97h3245r7sxhqms6q1csbkss2wvq-python-anndata-0.6.18.drv failed
View build log at '/var/log/guix/drvs/ma/6q97h3245r7sxhqms6q1csbkss2wvq-python-anndata-0.6.18.drv.bz2'.
guix build: error: build of
`/gnu/store/ma6q97h3245r7sxhqms6q1csbkss2wvq-python-anndata-0.6.18.drv'
failed
--8<---------------cut here---------------end--------------->8---

On master c1febbbf94ee794d7a97dbde12102634f2b13529.

             reply	other threads:[~2020-03-02 19:30 UTC|newest]

Thread overview: 3+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2020-03-02 19:29 Maxim Cournoyer [this message]
2020-03-04 13:27 ` bug#39872: python-anndata fails to build Roel Janssen
2020-03-08  2:54   ` Maxim Cournoyer

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://guix.gnu.org/

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to=878ski5zdj.fsf@gmail.com \
    --to=maxim.cournoyer@gmail.com \
    --cc=39872@debbugs.gnu.org \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/guix.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).