bug#30282: package julia build error

[ludo@gnu.org (Ludovic Courtès)]

Hi,

Marco van Hulten <marco@hulten.org> skribis:

> $ guix package -i julia
> [...]

[...]

> EOFError()CapturedExceptionEOFError(()CapturedException(EOFError()CapturedException(EOFError(EOFError()), EOFError(), , Any[Any[(Any[(((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})(::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(29) - Unknown remote, closing connection.
> () at event.jl:73, 1)])
> Process(31) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError()EOFError()CapturedException(EOFErrorCapturedException((), EOFErrorEOFError(()), , Any[AnyAny[[(EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(31) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> (((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})1)])
> Process(34) - Unknown remote, closing connection.
> (::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(30) - Unknown remote, closing connection.
> () at event.jl:73, 1)])
> Process(32) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(32) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(34) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(33) - Unknown remote, closing connection.
> EOFError()CapturedException(EOFError(), Any[((::Base.Distributed.##99#100{TCPSocket,TCPSocket,Bool})() at event.jl:73, 1)])
> Process(34) - Unknown remote, closing connection.
> distributed (3)           |  190.79  |  0.00  |  0.0 |  1.01      | 1708.66
> examples (2)              |   31.02  |  1.51  |  4.9 | 617.02     | 1654.81
> ERROR: LoadError: rmprocs: pids [3] not terminated after 30 seconds.
> Stacktrace:
>  [1] _rmprocs(::Array{Int64,1}, ::Int64) at ./distributed/cluster.jl:807
>  [2] #rmprocs#70(::Int64, ::Function, ::Array{Int64,1}, ::Vararg{Array{Int64,1},N} where N) at ./distributed/cluster.jl:775
>  [3] (::##40#46)() at /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl:93
>  [4] cd(::##40#46, ::String) at ./file.jl:70
> while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
> make[1]: *** [Makefile:18: all] Error 1

The test failures I have with current master are different:

--8<---------------cut here---------------start------------->8---
Error in testset distributed:
Error During Test
  Got an exception of type LoadError outside of a @test
  LoadError: Distributed test failed, cmd : `/tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/usr/bin/julia --check-bounds=yes --startup-file=no --depwarn=error distributed_exec.jl`
  while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/distributed.jl, in expression starting on line 9
Error in testset libgit2:
Test Failed
  Expression: startswith(sprint(show, e), "GitError(Code:ENOTFOUND, Class:OS, Failed to resolve path")
Error in testset libgit2:
Test Failed
  Expression: err.msg == "Invalid Content-Type: text/plain"
   Evaluated: "invalid Content-Type: text/plain" == "Invalid Content-Type: text/plain"
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
make: *** [Makefile:558: test] Error 2
phase `check' failed after 1300.8 seconds
--8<---------------cut here---------------end--------------->8---

I fixed the libgit2 errors and got rid of the ldconfig warnings we had:

  9805ad6f8 * gnu: julia: Don't invoke /sbin/ldconfig.
  d40b5684c * gnu: julia: Adjust libgit2 tests.

However I now get another test failure:

--8<---------------cut here---------------start------------->8---
Error in testset linalg/arnoldi:
Test Failed
  Expression: sort((eigs(A, B, nev=k, sigma=1.0))[1]) ≈ sort((eigvals(A, B))[1:k])
   Evaluated: [0.022743, 0.165356, 2.892] ≈ [0.022743, 2.892, 1.0574e15]
ERROR: LoadError: Test run finished with errors
while loading /tmp/guix-build-julia-0.6.0.drv-0/julia-0.6.0/test/runtests.jl, in expression starting on line 29
make[1]: *** [Makefile:18: all] Error 1
--8<---------------cut here---------------end--------------->8---

Thoughts?  :-)

Ludo’.