Dear,
Thank you for the report.
On Wed, 04 Nov 2020 at 19:17, Godefroy Vannoye <godefroy.vannoye@gmail.com> wrote:
> First let me apologize if I have missed something, I'm a new user of
> guix and know only the basics about compilation processes.
Welcome! :-)
> I am using guix on the Arch distribution, and installed it using the
> shell installer script. My first tests seem to indicate that guix is
> installed properly.
The Guix Data Service indicates that the package avogrado is broken.
https://data.guix.gnu.org/repository/1/branch/master/package/avogadro/output-history
> I then tried to install Avogadro, but met the following error when
> building it:
>
> make[1]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build'
> make: *** [Makefile:155: all] Error 2
> command "make" "-j" "4" failed with status 2
> note: keeping build directory `/tmp/guix-build-avogadro-1.2.0.drv-0'
> builder for
> `/gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv' failed
> with exit code 1
> build of /gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv
> failed
Before that, I get:
--8<---------------cut here---------------start------------->8---
[..]
-- Setting new boost python libraries
CMake Error: failed to create symbolic link '/tmp/guix-build-avogadro-1.2.0.drv-0/build/libavogadro/include/avogadro//tmp/guix-build-avogadro-1.2.0.drv-0/build/libavogadro/src/config.h': no such file or directory
-- Enabled python terminal
CMake Warning at libavogadro/src/extensions/symmetry/libmsym/CMakeLists.txt:44 (export):
Cannot create package registry file:
/homeless-shelter/.cmake/packages/libmsym/0734694d5c49e2816b4ae48943d7700a
No such file or directory
[..]
--8<---------------cut here---------------end--------------->8---
then:
--8<---------------cut here---------------start------------->8---
[..]
/tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c: In function ‘orbitalFromQuantumNumbers’:
/tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:70:24: error: non-floating-point argument in call to function ‘__builtin_signbit’
char *d = (signbit(m) == 1 ? "-" : "+");
^~~~~~~
/tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:76:24: error: non-floating-point argument in call to function ‘__builtin_signbit’
char *d = (signbit(m) == 1 ? "-" : "+");
^~~~~~~
make[2]: *** [libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make:170: libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o] Error 1
make[2]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build'
make[1]: *** [CMakeFiles/Makefile2:2069: libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/all] Error 2
make[2]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build'
make[1]: *** [CMakeFiles/Makefile2:2069: libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o
[..]
--8<---------------cut here---------------end--------------->8---
> I retried to build it by running guix build avogadro -K to look at the
> makefile and found at line 155
I get the same thing. But I think the error comes from an early step.
Well, then I am running:
cd /tmp/guix-build-avogadro-1.2.0.drv-0
mkdir mine && cd mine
guix environmment avogadro
cmake ../avogadro-1.2.0-checkout/
--8<---------------cut here---------------start------------->8---
[..]
CMake Error: failed to create symbolic link '/tmp/guix-build-avogadro-1.2.0.drv-0/my/libavogadro/include/avogadro//tmp/guix-build-avogadro-1.2.0.drv-0/my/libavogadro/src/config.h': no such file or directory
[..]
--8<---------------cut here---------------end--------------->8---
So I would try to address this first error by examining the folder avogadro-1.2.0-checkout/.
All the best,
simon