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Mon, 09 Nov 2020 15:30:47 -0800 (PST) From: zimoun In-Reply-To: <2f4832e0-c173-bd24-fd77-9d6b587f6095@gmail.com> References: <2f4832e0-c173-bd24-fd77-9d6b587f6095@gmail.com> Date: Tue, 10 Nov 2020 00:27:06 +0100 Message-ID: <86mtzq9kmt.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=fail (headers rsa verify failed) header.d=gmail.com header.s=20161025 header.b=ch/S2hkN; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of bug-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=bug-guix-bounces@gnu.org X-Spam-Score: 0.09 X-TUID: hWxPUPilp6/H Dear, Thank you for the report. On Wed, 04 Nov 2020 at 19:17, Godefroy Vannoye = wrote: > First let me apologize if I have missed something, I'm a new user of > guix and know only the basics about compilation processes. Welcome! :-) > I am using guix on the Arch distribution, and installed it using the > shell installer script. My first tests seem to indicate that guix is > installed properly. The Guix Data Service indicates that the package avogrado is broken. https://data.guix.gnu.org/repository/1/branch/master/package/avogadro/outpu= t-history > I then tried to install Avogadro, but met the following error when > building it: > > make[1]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build' > make: *** [Makefile:155: all] Error 2 > command "make" "-j" "4" failed with status 2 > note: keeping build directory `/tmp/guix-build-avogadro-1.2.0.drv-0' > builder for > `/gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv' failed > with exit code 1 > build of /gnu/store/pc3pdcpm0mwbfvymwizfs14mdfb6qa5x-avogadro-1.2.0.drv > failed Before that, I get: --8<---------------cut here---------------start------------->8--- [..] -- Setting new boost python libraries CMake Error: failed to create symbolic link '/tmp/guix-build-avogadro-1.2.0= .drv-0/build/libavogadro/include/avogadro//tmp/guix-build-avogadro-1.2.0.dr= v-0/build/libavogadro/src/config.h': no such file or directory -- Enabled python terminal CMake Warning at libavogadro/src/extensions/symmetry/libmsym/CMakeLists.txt= :44 (export): Cannot create package registry file: /homeless-shelter/.cmake/packages/libmsym/0734694d5c49e2816b4ae48943d77= 00a No such file or directory [..] --8<---------------cut here---------------end--------------->8--- then: --8<---------------cut here---------------start------------->8--- [..] /tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/sr= c/extensions/symmetry/libmsym/src/orbital.c: In function =E2=80=98orbitalFr= omQuantumNumbers=E2=80=99: /tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/sr= c/extensions/symmetry/libmsym/src/orbital.c:70:24: error: non-floating-poin= t argument in call to function =E2=80=98__builtin_signbit=E2=80=99 char *d =3D (signbit(m) =3D=3D 1 ? "-" : "+"); ^~~~~~~ /tmp/guix-build-avogadro-1.2.0.drv-0/avogadro-1.2.0-checkout/libavogadro/sr= c/extensions/symmetry/libmsym/src/orbital.c:76:24: error: non-floating-poin= t argument in call to function =E2=80=98__builtin_signbit=E2=80=99 char *d =3D (signbit(m) =3D=3D 1 ? "-" : "+"); ^~~~~~~ make[2]: *** [libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.d= ir/build.make:170: libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/m= sym.dir/src/orbital.c.o] Error 1 make[2]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build' make[1]: *** [CMakeFiles/Makefile2:2069: libavogadro/src/extensions/symmetr= y/libmsym/CMakeFiles/msym.dir/all] Error 2 make[2]: Leaving directory '/tmp/guix-build-avogadro-1.2.0.drv-0/build' make[1]: *** [CMakeFiles/Makefile2:2069: libavogadro/src/extensions/symmetr= y/libmsym/CMakeFiles/msym.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 1%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.di= r/eyecandy.cpp.o [..] --8<---------------cut here---------------end--------------->8--- > I retried to build it by running guix build avogadro -K to look at the > makefile and found at line 155 I get the same thing. But I think the error comes from an early step. Well, then I am running: cd /tmp/guix-build-avogadro-1.2.0.drv-0 mkdir mine && cd mine guix environmment avogadro cmake ../avogadro-1.2.0-checkout/ --8<---------------cut here---------------start------------->8--- [..] CMake Error: failed to create symbolic link '/tmp/guix-build-avogadro-1.2.0= .drv-0/my/libavogadro/include/avogadro//tmp/guix-build-avogadro-1.2.0.drv-0= /my/libavogadro/src/config.h': no such file or directory [..] --8<---------------cut here---------------end--------------->8--- So I would try to address this first error by examining the folder avogadro= -1.2.0-checkout/. All the best, simon