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Wed, 28 Oct 2020 12:13:59 -0700 (PDT) From: zimoun References: <20200717121414.056f6ddf@alma-ubu> Date: Wed, 28 Oct 2020 20:13:58 +0100 In-Reply-To: <20200717121414.056f6ddf@alma-ubu> ("=?UTF-8?Q?Bj=C3=B6rn_?= =?UTF-8?Q?H=C3=B6fling?="'s message of "Fri, 17 Jul 2020 12:14:14 +0200") Message-ID: <86lffqyxhl.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) Emacs/27.1 (gnu/linux) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Spam-Score: -1.0 (-) X-BeenThere: bug-guix@gnu.org List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: 42405@debbugs.gnu.org Errors-To: bug-guix-bounces+larch=yhetil.org@gnu.org Sender: "bug-Guix" X-Scanner: scn0 Authentication-Results: aspmx1.migadu.com; dkim=fail (rsa verify failed) header.d=gmail.com header.s=20161025 header.b=d4UQ/fgh; dmarc=fail reason="SPF not aligned (relaxed)" header.from=gmail.com (policy=none); spf=pass (aspmx1.migadu.com: domain of bug-guix-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=bug-guix-bounces@gnu.org X-Spam-Score: 0.09 X-TUID: 8iIzk6ExZ64S Dear, On Fri, 17 Jul 2020 at 12:14, Bj=C3=B6rn H=C3=B6fling wrote: > It is missing the (proprietary) SZIP Compression Library. Well, it built fine with 63b75c01c2374edc38437215278f50b617a12c08. And now using Guix 02c3c51, I get also fine: --8<---------------cut here---------------start------------->8--- $ guix build r-hdf5array /gnu/store/qrxrky9jj0mv96yy1875qfwwig7mgsyd-r-hdf5array-1.16.1 $ guix build r-hdf5array --no-grafts --check=20 The following derivation will be built: /gnu/store/l59g16jyb2n2nw2n72qzxa5yapkwai51-r-hdf5array-1.16.1.drv building /gnu/store/l59g16jyb2n2nw2n72qzxa5yapkwai51-r-hdf5array-1.16.1.drv= ... [...] starting phase `install' * installing *source* package =E2=80=98HDF5Array=E2=80=99 ... ** using staged installation ** libs gcc -I"/gnu/store/01xi3sig314wgwa1j9sxk37vl816mj74-r-minimal-4.0.3/lib/R/in= clude" -DNDEBUG -I'/gnu/store/c1pkb6xv0zjapcgvjl7ihng65c2q83rw-r-s4vectors= -0.26.1/site-library/S4Vectors/include' -I'/gnu/store/l95pry5yf7x634jchpvas= rsqqqvlx7dm-r-rhdf5lib-1.10.1/site-library/Rhdf5lib/include' -I/usr/local/i= nclude -fpic -g -O2 -c H5DSetDescriptor.c -o H5DSetDescriptor.o gcc -I"/gnu/store/01xi3sig314wgwa1j9sxk37vl816mj74-r-minimal-4.0.3/lib/R/in= clude" -DNDEBUG -I'/gnu/store/c1pkb6xv0zjapcgvjl7ihng65c2q83rw-r-s4vectors= -0.26.1/site-library/S4Vectors/include' -I'/gnu/store/l95pry5yf7x634jchpvas= rsqqqvlx7dm-r-rhdf5lib-1.10.1/site-library/Rhdf5lib/include' -I/usr/local/i= nclude -fpic -g -O2 -c R_init_HDF5Array.c -o R_init_HDF5Array.o gcc -I"/gnu/store/01xi3sig314wgwa1j9sxk37vl816mj74-r-minimal-4.0.3/lib/R/in= clude" -DNDEBUG -I'/gnu/store/c1pkb6xv0zjapcgvjl7ihng65c2q83rw-r-s4vectors= -0.26.1/site-library/S4Vectors/include' -I'/gnu/store/l95pry5yf7x634jchpvas= rsqqqvlx7dm-r-rhdf5lib-1.10.1/site-library/Rhdf5lib/include' -I/usr/local/i= nclude -fpic -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/gnu/store/01xi3sig314wgwa1j9sxk37vl816mj74-r-minimal-4.0.3/lib/R/in= clude" -DNDEBUG -I'/gnu/store/c1pkb6xv0zjapcgvjl7ihng65c2q83rw-r-s4vectors= -0.26.1/site-library/S4Vectors/include' -I'/gnu/store/l95pry5yf7x634jchpvas= rsqqqvlx7dm-r-rhdf5lib-1.10.1/site-library/Rhdf5lib/include' -I/usr/local/i= nclude -fpic -g -O2 -c array_selection.c -o array_selection.o gcc -I"/gnu/store/01xi3sig314wgwa1j9sxk37vl816mj74-r-minimal-4.0.3/lib/R/in= clude" -DNDEBUG -I'/gnu/store/c1pkb6xv0zjapcgvjl7ihng65c2q83rw-r-s4vectors= -0.26.1/site-library/S4Vectors/include' -I'/gnu/store/l95pry5yf7x634jchpvas= rsqqqvlx7dm-r-rhdf5lib-1.10.1/site-library/Rhdf5lib/include' -I/usr/local/i= nclude -fpic -g -O2 -c h5dimscales.c -o h5dimscales.o gcc -I"/gnu/store/01xi3sig314wgwa1j9sxk37vl816mj74-r-minimal-4.0.3/lib/R/in= clude" -DNDEBUG -I'/gnu/store/c1pkb6xv0zjapcgvjl7ihng65c2q83rw-r-s4vectors= -0.26.1/site-library/S4Vectors/include' -I'/gnu/store/l95pry5yf7x634jchpvas= rsqqqvlx7dm-r-rhdf5lib-1.10.1/site-library/Rhdf5lib/include' -I/usr/local/i= nclude -fpic -g -O2 -c h5mread.c -o h5mread.o gcc -shared -L/gnu/store/01xi3sig314wgwa1j9sxk37vl816mj74-r-minimal-4.0.3/l= ib/R/lib -L/usr/local/lib -o HDF5Array.so H5DSetDescriptor.o R_init_HDF5Arr= ay.o S4Vectors_stubs.o array_selection.o h5dimscales.o h5mread.o /gnu/store= /l95pry5yf7x634jchpvasrsqqqvlx7dm-r-rhdf5lib-1.10.1/site-library/Rhdf5lib/l= ib/libhdf5_hl.a /gnu/store/l95pry5yf7x634jchpvasrsqqqvlx7dm-r-rhdf5lib-1.10= .1/site-library/Rhdf5lib/lib/libhdf5.a -lz -L/gnu/store/01xi3sig314wgwa1j9s= xk37vl816mj74-r-minimal-4.0.3/lib/R/lib -lR installing to /gnu/store/w29frb8jpz0w8xkj7p4rxvs7agzqfpvv-r-hdf5array-1.16.= 1/site-library/00LOCK-HDF5Array/00new/HDF5Array/libs ** R ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation pa= th * DONE (HDF5Array) [...] successfully built /gnu/store/l59g16jyb2n2nw2n72qzxa5yapkwai51-r-hdf5array-= 1.16.1.drv /gnu/store/w29frb8jpz0w8xkj7p4rxvs7agzqfpvv-r-hdf5array-1.16.1 --8<---------------cut here---------------end--------------->8--- Could you confirm it works for you? If yes, feel free to close the bug? All the best, simon