From mboxrd@z Thu Jan 1 00:00:00 1970 From: Wiktor =?UTF-8?Q?=C5=BBelazny?= Subject: bug#39204: r-rgdal: Reading of vector GIS data causes segfault Date: Mon, 20 Jan 2020 16:43:02 +0100 Message-ID: <20200120154302.ijni47ou4fk4wd77@wzguix> Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="3ntvqlmlmobptpmk" Return-path: Received: from eggs.gnu.org ([2001:470:142:3::10]:52087) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1itZDf-00049D-2T for bug-guix@gnu.org; Mon, 20 Jan 2020 10:44:03 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1itZDe-0005Y5-5F for bug-guix@gnu.org; Mon, 20 Jan 2020 10:44:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:39870) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1itZDe-0005Xy-2f for bug-guix@gnu.org; Mon, 20 Jan 2020 10:44:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1itZDe-0007y6-0o for bug-guix@gnu.org; Mon, 20 Jan 2020 10:44:02 -0500 Sender: "Debbugs-submit" Resent-Message-ID: Received: from eggs.gnu.org ([2001:470:142:3::10]:52022) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1itZCp-00043B-SI for bug-guix@gnu.org; Mon, 20 Jan 2020 10:43:12 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1itZCo-00056E-R8 for bug-guix@gnu.org; Mon, 20 Jan 2020 10:43:11 -0500 Received: from freeshell.de ([2a01:360:106::2]:43938) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1itZCo-00054C-LP for bug-guix@gnu.org; Mon, 20 Jan 2020 10:43:10 -0500 Content-Disposition: inline List-Id: Bug reports for GNU Guix List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: bug-guix-bounces+gcggb-bug-guix=m.gmane-mx.org@gnu.org Sender: "bug-Guix" To: 39204@debbugs.gnu.org --3ntvqlmlmobptpmk Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Hi list, The same behaviour on two machines. To reproduce: guix environment --container --ad-hoc r r-rgdal Rscript -e 'library(rgdal); dsn <- system.file("vectors", package =3D "rgda= l")[1]; ogrInfo(dsn=3Ddsn, layer=3D"cities")' Loading required package: sp rgdal: version: 1.4-8, (SVN revision 845) Geospatial Data Abstraction Library extensions to R successfully loaded Loaded GDAL runtime: GDAL 3.0.2, released 2019/10/28 Path to GDAL shared files: GDAL binary built with GEOS: TRUE Loaded PROJ.4 runtime: Rel. 4.9.3, 15 August 2016, [PJ_VERSION: 493] Path to PROJ.4 shared files: (autodetected) Linking to sp version: 1.3-2 *** caught segfault *** address 0x30, cause 'memory not mapped' Traceback: 1: ogrFIDs(dsn =3D dsn, layer =3D layer) 2: ogrInfo(dsn =3D dsn, layer =3D "cities") An irrecoverable exception occurred. R is aborting now ... sh: rm: command not found Segmentation fault Opening with QGIS, which also depends on GDAL (it uses PROJ.6 instead of PROJ.4, though), works. W=C5=BB --3ntvqlmlmobptpmk Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQKTBAABCgB9FiEEvcl0zdnJun12Glc9xzWoxqtgedUFAl4lyoVfFIAAAAAALgAo aXNzdWVyLWZwckBub3RhdGlvbnMub3BlbnBncC5maWZ0aGhvcnNlbWFuLm5ldEJE Qzk3NENERDlDOUJBN0Q3NjFBNTczREM3MzVBOEM2QUI2MDc5RDUACgkQxzWoxqtg edXBbRAAiHRLgSh8t37I1rLK4aCKspdWbQ/hZ1qU2LsK7526w9/GgU7XySB+Wg2A XMP5age6Uqo/SpQUqcIFEH0wpHnX2W7qv0w+n9OkMHbbI6aq+I70UKoocMe/nsl9 Pks/3vg/Qh8wci5Uf5N2k6WlSzpoWm3nPbNf/7dbVseEeCpuxxWccRmsmWpjLYsb XODc8bJkyeQqqml+Qe3w6zapBieyipv413rzT1LRIxlq2TbInyhAPLSqCuyU+n9e aBjMuLU62/CIVMCwTZS24XCYl8Gt9aFx8xKoTKs3c9u2jqL0LsTLbCjdr7Ox6VR5 H7KCSzrsiiazBXF23hKjVBCiL7ZCOFNJz+QDVKr0j/8Yd+V3/szIrUu/nbGuxRud kuadGNHx6X73VR1a8ue91mBvb46aPFbQzUEwTPGaWXuJ4+BW09AL8hS2yCZwpdEA jKBsbkL3HIk+WJHsym6Sr4lU9eOsV4hJbjUEuPcMZ1xKKY8HHJqgzh+lS+GkxFvQ /1tUd3ZSKqiBc7y83au0VVzyXSR2I6mUNF8nfdqVKckLiFtV4djPiR6NCpmDpkxB rSDn+ctznHmCaT8xfxnmgkRUJd7QDOhoPtIuivUY/o8pvY2UZbhsUSXIDH8K41l0 FtqV+OJTT8r0XgUECArQ53yV6/N9MDsOfvXAKAvryqRjgaN7QHE= =p8uW -----END PGP SIGNATURE----- --3ntvqlmlmobptpmk--