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From: Eli Zaretskii <eliz@gnu.org>
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Subject: Re: autogen.sh question
Date: Mon, 26 Sep 2005 06:47:14 +0300
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> From: Thien-Thi Nguyen <ttn@gnu.org>
> Date: 25 Sep 2005 17:36:45 -0400
> Cc: emacs-devel@gnu.org
> 
> the top-level ChangeLog gives a hint about the practice: modify
> configure.in, regenerate configure, and check in both files.

Not only configure needs to be regenerated; src/config.in is another
file that needs to be remade (with `autoheader') whenever configure.in
changes.