From mboxrd@z Thu Jan 1 00:00:00 1970 From: Andreas Leha Subject: Re: Emacs/ESS/org freezes/hangs on big data/ RAM(~256GB) processes when run in org/babel Date: Fri, 19 Jun 2015 23:25:35 +0100 Message-ID: References: Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:45618) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Z64jJ-0000Fz-Cd for emacs-orgmode@gnu.org; Fri, 19 Jun 2015 18:25:46 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1Z64jG-0000Ep-6n for emacs-orgmode@gnu.org; Fri, 19 Jun 2015 18:25:45 -0400 Received: from plane.gmane.org ([80.91.229.3]:34210) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1Z64jF-0000Cw-W3 for emacs-orgmode@gnu.org; Fri, 19 Jun 2015 18:25:42 -0400 Received: from list by plane.gmane.org with local (Exim 4.69) (envelope-from ) id 1Z64jE-0007GF-Lb for emacs-orgmode@gnu.org; Sat, 20 Jun 2015 00:25:40 +0200 Received: from cpc33-cmbg15-2-0-cust4.5-4.cable.virginm.net ([81.102.136.5]) by main.gmane.org with esmtp (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Sat, 20 Jun 2015 00:25:40 +0200 Received: from andreas.leha by cpc33-cmbg15-2-0-cust4.5-4.cable.virginm.net with local (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Sat, 20 Jun 2015 00:25:40 +0200 List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode@gnu.org "Charles C. Berry" writes: > On Thu, 18 Jun 2015, Andreas Leha wrote: > >> Hi Chuck, >> >> [snip: all context about workflows for R projects] >> >>> For example, the bioConductor package geneRxCluster [1] comes from an >>> Org mode document that contains the C and R code as src blocks and a >>> subtree with the vignette (Using geneRxCluster) that analyzes data, >>> produces graphics, etc. tangle-ing the src blocks and exporting the >>> vignette creates the package. >>> >> >> I'd love to see that org document, but I do not seem to be able to find >> it. Is it available anywhere? > > Andreas, > > It is now, or at least the relevant subset of it is at: > > https://github.com/chasberry/geneRx/blob/master/Rpackage.org > > It is best viewed in Org mode as there are internal links that github > does not honor (so you get `404 This is not...' messages if you click > on them). > > And it is best to use those internal links as the file was not > designed to be read from top to bottom - it has lots of snippets I > used to develop and check code along the way that are not in the > actual package and I have left them in place. > That is awesome! Really appreciated! I will take a good look. Thanks, Andreas