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From: Andreas Leha <andreas.leha@med.uni-goettingen.de>
To: emacs-orgmode@gnu.org
Subject: [babel] noweb reference with default values
Date: Mon, 14 Dec 2015 13:28:05 +0000	[thread overview]
Message-ID: <olu4mfl6ty2.fsf@med.uni-goettingen.de> (raw)

Hi all,

I'd like to hear your ideas on how to include noweb references to code
blocks in a way that the default values are used as parameter values.

Here is a little example:

#+PROPERTY: header-args:R :session *testR*

The background is that I like to use Org mode table to record small data.

#+name: datatable
| A |  B |
|---+----|
| 1 | 10 |
| 2 | 20 |

Usually I want to pre-process and/or convert such data.

#+name: read_datatable
#+header: :var datatable=datatable
#+begin_src R :results none
  datatable$B <- 10 * datatable$B 
#+end_src

Later I would like to use that data in larger (R-) code blocks.  I'd
like such code blocks to DWIM:

#+name: some_code
#+begin_src R :noweb yes :results graphics :file testplot.png
  <<read_datatable>>
  plot(datatable$A, datatable$B)
#+end_src

But they do not: They are not stand alone and do not execute -- unless I
executed `read_datatable' manually/by chance upfront.



My current solution is to export the table to csv and read that csv in
`read_datatable'.

If the result of `read_datatable' is a single table again (as in this
MWE) I usually return that to Org mode which works ok.  But often the
result is more complex than that.

I see two ways to go:
- I could serialize more complex objects to disk and return a file name.
  But I'd prefer to not go through disk.
- I could pass the same arguments as to `read_datatable' also to
  `some_code'.  But that is duplication and becomes quite convoluted in
  the case of several noweb references with several arguments each.

Any ideas how to do that better?

Thanks,
Andreas

             reply	other threads:[~2015-12-14 13:28 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2015-12-14 13:28 Andreas Leha [this message]
2015-12-14 16:45 ` [babel] noweb reference with default values Charles C. Berry
2015-12-14 22:18   ` Andreas Leha
2015-12-17 11:47     ` Andreas Leha

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