Implementing Reproducible Research

Implementing Reproducible Research

[Christophe Pouzat]

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Hi All,

The book "Implementing Reproducible Research" edited by V. Stodden, F.
Leisch and R. D. Peng came out last month (I don't have a copy) and I just
found out that you can get the chapters (in PDF) from the editors' site:
https://osf.io/s9tya/
I did not have enough time to go trhough all of it but org is mentioned a
couple of times!

Christophe

-- 
A Master Carpenter has many tools and is expert with most of them. If you
only know how to use a hammer, every problem starts to look like a nail.
Stay away from that trap.

Richard B Johnson.

--

Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France

tel: +33142863828
mobile: +33662941034
web: http://xtof.disque.math.cnrs.fr

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Re: Implementing Reproducible Research

[Thomas S. Dye]

Aloha Christophe,

Chapter 8, Reproducible Research for Large-Scale Data Analysis, by
Holger Hoefling and Anthony Rossini uses Org mode for literate
programming and for reproducible research.  The article focuses on the
challenges faced by a large-scale data analysis, where the full R code
base might run hours or days to produce a final result.  The working
solution involves a program, makepp, that implements make based on hash
codes of files, rather than timestamps, which change with every
tangling.

Org mode was clearly central to the work.  It is favorably compared to
the tools sweave and knitr familiar to R programmers.

Thanks for pointing this out.

All the best,
Tom

Christophe Pouzat <christophe.pouzat@gmail.com> writes:

> Hi All,
>
> The book "Implementing Reproducible Research" edited by V. Stodden, F.
> Leisch and R. D. Peng came out last month (I don't have a copy) and I just
> found out that you can get the chapters (in PDF) from the editors' site:
> https://osf.io/s9tya/
> I did not have enough time to go trhough all of it but org is mentioned a
> couple of times!
>
> Christophe
>
> -- 
> A Master Carpenter has many tools and is expert with most of them. If you
> only know how to use a hammer, every problem starts to look like a nail.
> Stay away from that trap.
>
> Richard B Johnson.
>
> --
>
> Christophe Pouzat
> MAP5 - Mathématiques Appliquées à Paris 5
> CNRS UMR 8145
> 45, rue des Saints-Pères
> 75006 PARIS
> France
>
> tel: +33142863828
> mobile: +33662941034
> web: http://xtof.disque.math.cnrs.fr
> Hi All,
>
> The book "Implementing Reproducible Research" edited by V. Stodden, F.
> Leisch and R. D. Peng came out last month (I don't have a copy) and I
> just found out that you can get the chapters (in PDF) from the
> editors' site: https://osf.io/s9tya/
> I did not have enough time to go trhough all of it but org is
> mentioned a couple of times!
>
> Christophe

-- 
Thomas S. Dye
http://www.tsdye.com

Implementing Reproducible Research

[Christophe Pouzat]

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Hi all,

I've just seen that a book, Implementing Reproducible
Research<http://www.amazon.com/Implementing-Reproducible-Research-Chapman-Series/dp/1466561599>,
edited by V. Stodden, F. Leisch and R. Peng is coming out next year from
CRC. I was wondering if anyone has written a chapter  presenting org for
it. Any clue?

Christophe

-- 
A Master Carpenter has many tools and is expert with most of them. If you
only know how to use a hammer, every problem starts to look like a nail.
Stay away from that trap.

Richard B Johnson.

--

Christophe Pouzat
MAP5 - Mathématiques Appliquées à Paris 5
CNRS UMR 8145
45, rue des Saints-Pères
75006 PARIS
France

tel: +33142863828
mobile: +33662941034
web: http://xtof.disque.math.cnrs.fr

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Re: Implementing Reproducible Research

[Thomas S. Dye]

Aloha Christophe,

Thanks for spotting this. I don't know if anyone has written a chapter
presenting org. I haven't seen anything on the ML.

All the best,
Tom

Christophe Pouzat <christophe.pouzat@gmail.com> writes:

> Hi all,
>
> I've just seen that a book, Implementing Reproducible
> Research<http://www.amazon.com/Implementing-Reproducible-Research-Chapman-Series/dp/1466561599>,
> edited by V. Stodden, F. Leisch and R. Peng is coming out next year from
> CRC. I was wondering if anyone has written a chapter  presenting org for
> it. Any clue?
>
> Christophe
>
> -- 
> A Master Carpenter has many tools and is expert with most of them. If you
> only know how to use a hammer, every problem starts to look like a nail.
> Stay away from that trap.
>
> Richard B Johnson.
>
> --
>
> Christophe Pouzat
> MAP5 - Mathématiques Appliquées à Paris 5
> CNRS UMR 8145
> 45, rue des Saints-Pères
> 75006 PARIS
> France
>
> tel: +33142863828
> mobile: +33662941034
> web: http://xtof.disque.math.cnrs.fr
> Hi all,
>
> I've just seen that a book, Implementing Reproducible Research, edited
> by V. Stodden, F. Leisch and R. Peng is coming out next year from CRC.
> I was wondering if anyone has written a chapter presenting org for it.
> Any clue?
>
> Christophe

-- 
Thomas S. Dye
http://www.tsdye.com