From mboxrd@z Thu Jan 1 00:00:00 1970 From: Rainer M Krug Subject: Re: Org and Citations / References / Bibliography Date: Fri, 06 Nov 2015 13:12:02 +0100 Message-ID: References: Mime-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha256; protocol="application/pgp-signature" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:52438) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZufsO-0000aB-6B for emacs-orgmode@gnu.org; Fri, 06 Nov 2015 07:12:17 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1ZufsK-00089J-BC for emacs-orgmode@gnu.org; Fri, 06 Nov 2015 07:12:16 -0500 Received: from mail-wm0-f42.google.com ([74.125.82.42]:35769) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1ZufsK-00089A-1g for emacs-orgmode@gnu.org; Fri, 06 Nov 2015 07:12:12 -0500 Received: by wmll128 with SMTP id l128so33620555wml.0 for ; Fri, 06 Nov 2015 04:12:11 -0800 (PST) In-Reply-To: (John Kitchin's message of "Fri, 06 Nov 2015 06:48:58 -0500") List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: John Kitchin Cc: emacs-orgmode@gnu.org --=-=-= Content-Type: text/plain Content-Transfer-Encoding: quoted-printable John Kitchin writes: > Rainer M Krug writes: > >> It does now. I went through the setup process slowly again using the >> README.org and the org-ref.org in >> [[https://github.com/jkitchin/org-ref]] as guidelines and it worked. >> >> But I could not install any of the "useful libraries", as none of them >> seems to be on melpa et al? > > These should all be in the org-ref distribution, so if you have that in > your load-path it should work, or add something like :load-path > "~/.emacs.d/org-ref" to the optional libaries too. OK - I had to install key-chord as it is a dependency from jmax-bibtex. Thanks. > > Thanks for sharing your setup. I have not used use-package much, but > yours looks pretty clean! Pleasure - that is the reason I started migrating to use-package - its clean structure and the ability to disable packages by simply adding ,---- | :disalbled t `---- and to install via the package manager by adding ,---- | :ensure t `---- I am still struggling with larger configurations (like org-mode and ESS, wh= ich have different sections in my emacs.org), but I am getting there. Cheers, Rainer PS: I started using your link for TODO [[http://kitchingroup.cheme.cmu.edu/blog/2015/04/24/Commenting-in-org-files= /]] and export to todonotes in LaTeX - very nice!=20 > >> >> Thanks a lot - and org-ref looks really great. >> >> Cheers, >> >> Rainer >> >> >> P.S.: >> >> Just for reference: I now have the following in my emacs.org file: >> >> *** org-ref >> See [[https://www.youtube.com/watch?v=3DJyvpSVl4_dg][org-ref video]] and= [[https://github.com/jkitchin/jmax/blob/master/org-ref.org][org-rel github= site]] for further details (John Kitchin) >> #+begin_src emacs-lisp >> (use-package ebib >> :ensure t >> ) >> (use-package dash >> :ensure t >> ) >> (use-package s >> :ensure t >> ) >> (use-package f >> :ensure t >> ) >> (use-package hydra >> :ensure t >> ) >> (use-package org-ref >> :ensure f >> :load-path "~/.emacs.d/org-ref" >> :config >> ;; README.org in org-ref repo for the why >> (setq reftex-default-bibliography '("~/Documents/Mendeley/bibliography= .bib")) >> ;; >> ;; see org-ref for use of these variables >> (setq org-ref-bibliography-notes "~/Documents/Mendeley/notes.org" >> org-ref-default-bibliography '("~/Documents/Mendeley/bibliograph= y.bib") >> org-ref-pdf-directory "~/iCloud/Mendeley/") >> ;; >> (setq helm-bibtex-bibliography "~/.emacs.d/org-ref/test.bib") >> (setq helm-bibtex-library-path "~/Dropbox/bibliography/bibtex-pdfs") >> ;; >> ;; open pdf with system pdf viewer (works on mac) >> (setq helm-bibtex-pdf-open-function >> (lambda (fpath) >> (start-process "open" "*open*" "open" fpath))) >> >> ;; :bind >> ;; You may want to set some convenient keys for working in your bibtex= file: >> ;; ("f10" . org-ref-open-bibtex-notes) >> ;; ("f11" . org-ref-open-bibtex-pdf) >> ;; ("f12" . org-ref-open-in-browser) >> ) >> ;; optional but very useful libraries in org-ref >> (use-package doi-utils >> :disabled t >> :ensure t >> ) >> (use-package jmax-bibtex >> :disabled t >> :ensure t >> ) >> (use-package pubmed >> :disabled t >> :ensure t >> ) >> (use-package arxiv >> :disabled t >> :ensure t >> ) >> (use-package sci-id >> :disabled t >> :ensure t >> ) >> #+end_src >> >>> >>> Rainer M Krug writes: >>> >>>> Hi >>>> >>>> I have been following the whole discussion about the implementation of= a >>>> good citation system in org, which is really necessary. >>>> >>>> At the moment I am again at that point where I would like to include >>>> citations in a document and I don't get any citation system to work - >>>> neither org-ref[1] nor org's org-reftex-citation nor reftex >>>> citation. None of these find anything in a .bib file, I have no overvi= ew >>>> where I have to specify the bib file and I am frustrated, because it >>>> worked some months ago. >>>> >>>> I would very much like to use org-ref, but I don't even get the suppli= ed >>>> examples to work, i.e. find something from the .bib file. >>>> >>>> Any suggestions what I can do, any simple / minimalistic init.el file >>>> which I can merge into my config? >>>> >>>> Thanks, >>>> >>>> Rainer >>>> >>>> >>>> Footnotes: >>>> [1] http://kitchingroup.cheme.cmu.edu/blog/2014/05/13/Using-org-ref-f= or-citations-and-references/ >>> >>> -- >>> Professor John Kitchin >>> Doherty Hall A207F >>> Department of Chemical Engineering >>> Carnegie Mellon University >>> Pittsburgh, PA 15213 >>> 412-268-7803 >>> @johnkitchin >>> http://kitchingroup.cheme.cmu.edu > > -- > Professor John Kitchin > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu =2D-=20 Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,= UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax : +33 - (0)9 58 10 27 44 Fax (D): +49 - (0)3 21 21 25 22 44 email: Rainer@krugs.de Skype: RMkrug PGP: 0x0F52F982 --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQEcBAEBCAAGBQJWPJkXAAoJENvXNx4PUvmCxccH/2FIvY0ut9vW3leAKMEHK/58 0oU2W6BEVU4SHXT33f+Vzx7ql7sNqeJCkcS4DL57Ly+Erx0oRwUCCilWQtYP+Aym yrO9NRGdQiA895YpYGsG81sOrBwTZ15+dTPVgGcQrZG57O/gD4Gc7cssmsexyAwk jRl1Vzy8Fn8s/pk3SHmNI1xh4T/SsDsKeMY2zvYFwh5U09Wi0V15RAdGS75rwpX5 6o0wlX8Wqq5cmu9LVqZn6xfST40Xbqx42b0f7n0VFgv7TttDNbk7hV6b7pK5qc0e Be1MsLzHsrDV+ORU1x7VbRBDQJEWj1BZg40nMWAJK3aQvB9L1xBuggk01Q8CGGQ= =tLcJ -----END PGP SIGNATURE----- --=-=-=--