Hello,
Sorry for disturbing you. In fact, this bug
not only affects macOS. I am an Arch Linux user
and install native-comp branch by AUR package
emacs-native-comp-git
(https://aur.archlinux.org/packages/emacs-native-comp-git/). It
will build and install the whole package in a temporary directory
and then pack the directory to a standalone package. So I also
suffer from this bug.
For example, in my computer, the package will be built in $srcdir ( /tmp/makepkg/emacs-native-comp-git/src ), and will be installed to $pkgdir ( /tmp/makepkg/emacs-native-comp-git/pkg/emacs-native-comp-git ). Then the whole $pkgdir will be packed into a package.
You can find more information here: https://wiki.archlinux.org/index.php/Creating_packages#package()
Thanks,
Aloxaf