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From: "Alfred M. Szmidt" <ams@kemisten.nu>
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Subject: Re: M-x indent-region
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   In emacs, 'M-x indent-region' is the best indent I've ever seen.

   How can I trigger this action from the command-line and have emacs
   indent an individual file?

Whats wrong with just using GNU indent?  They should do the same
thing.