I have 2 buffers open, with the desktop split vertically into 2 windows with C-x 3; I activated desktop-save-mode, Emacs asks me if I want to save the desktop when exiting, I say yes, Emacs saves desktop.

I reopen Emacs, M-x desktop-read, only 1 buffer is loaded, the desktop isn't loaded the way I saved it. It used to work before. I deleted .emacs.d and reinstalled everything from scratch, problem persists.

In GNU Emacs 24.5.1 (x86_64-pc-linux-gnu, GTK+ Version 3.18.9)

 of 2016-04-17 on lgw01-04, modified by Debian

Windowing system distributor `The X.Org Foundation', version 11.0.11804000

System Description: elementary OS 0.4.1 Loki

Configured using:

 `configure --build x86_64-linux-gnu --prefix=/usr

 --sharedstatedir=/var/lib --libexecdir=/usr/lib

 --localstatedir=/var/lib --infodir=/usr/share/info

 --mandir=/usr/share/man --with-pop=yes

 --enable-locallisppath=/etc/emacs24:/etc/emacs:/usr/local/share/emacs/24.5/site-lisp:/usr/local/share/emacs/site-lisp:/usr/share/emacs/24.5/site-lisp:/usr/share/emacs/site-lisp

 --build x86_64-linux-gnu --prefix=/usr --sharedstatedir=/var/lib

 --libexecdir=/usr/lib --localstatedir=/var/lib

 --infodir=/usr/share/info --mandir=/usr/share/man --with-pop=yes

 --enable-locallisppath=/etc/emacs24:/etc/emacs:/usr/local/share/emacs/24.5/site-lisp:/usr/local/share/emacs/site-lisp:/usr/share/emacs/24.5/site-lisp:/usr/share/emacs/site-lisp

 --with-x=yes --with-x-toolkit=gtk3 --with-toolkit-scroll-bars

 'CFLAGS=-g -O2 -fstack-protector-strong -Wformat

 -Werror=format-security -Wall' 'CPPFLAGS=-Wdate-time

 -D_FORTIFY_SOURCE=2' 'LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro''

Important settings:

  value of $LC_MONETARY: es_CL.UTF-8

  value of $LC_NUMERIC: es_CL.UTF-8

  value of $LC_TIME: es_CL.UTF-8

  value of $LANG: es_ES.UTF-8

  value of $XMODIFIERS: @im=ibus

  locale-coding-system: utf-8-unix

Major mode: CSS

Minor modes in effect:

  company-mode: t

  emmet-mode: t

  goto-address-prog-mode: t

  bug-reference-prog-mode: t

  auto-highlight-symbol-mode: t

  highlight-numbers-mode: t

  highlight-parentheses-mode: t

  rainbow-delimiters-mode: t

  yas-global-mode: t

  yas-minor-mode: t

  helm-descbinds-mode: t

  helm-mode: t

  helm-flx-mode: t

  projectile-mode: t

  recentf-mode: t

  desktop-save-mode: t

  mode-icons-mode: t

  rainbow-mode: t

  minimap-mode: t

  sublimity-mode: t

  hl-todo-mode: t

  winum-mode: t

  winner-mode: t

  volatile-highlights-mode: t

  global-vi-tilde-fringe-mode: t

  vi-tilde-fringe-mode: t

  spaceline-info-mode: t

  spaceline-helm-mode: t

  savehist-mode: t

  popwin-mode: t

  persp-mode: t

  Info-breadcrumbs-in-mode-line-mode: t

  flycheck-pos-tip-mode: t

  global-flycheck-mode: t

  flx-ido-mode: t

  eyebrowse-mode: t

  global-evil-surround-mode: t

  evil-surround-mode: t

  global-evil-search-highlight-persist: t

  evil-search-highlight-persist: t

  show-smartparens-global-mode: t

  show-smartparens-mode: t

  smartparens-mode: t

  evil-escape-mode: t

  global-anzu-mode: t

  anzu-mode: t

  eval-sexp-fu-flash-mode: t

  clean-aindent-mode: t

  holy-mode: t

  which-key-mode: t

  override-global-mode: t

  global-undo-tree-mode: t

  undo-tree-mode: t

  shell-dirtrack-mode: t

  evil-mode: t

  evil-local-mode: t

  spacemacs-leader-override-mode: t

  global-spacemacs-leader-override-mode: t

  global-hl-line-mode: t

  xterm-mouse-mode: t

  global-auto-revert-mode: t

  ido-vertical-mode: t

  global-page-break-lines-mode: t

  electric-indent-mode: t

  mouse-wheel-mode: t

  file-name-shadow-mode: t

  global-font-lock-mode: t

  font-lock-mode: t

  auto-composition-mode: t

  auto-encryption-mode: t

  auto-compression-mode: t

  column-number-mode: t

  line-number-mode: t

  transient-mark-mode: t

  hs-minor-mode: t

Recent messages:

Loading /home/dmayr/.emacs.d/layers/+distributions/spacemacs-base/keybindings.el (source)...done

Loading /home/dmayr/.emacs.d/layers/+emacs/better-defaults/keybindings.el (source)...done

Loading /home/dmayr/.emacs.d/.cache/spacemacs-buffer.el (source)...done

Spacemacs is ready.

Loading /home/dmayr/.emacs.d/.cache/recentf...done

Open the quickhelp.

Skipping check for new version (reason: dotfile)

Auto-evilification could not remap these functions in map `edebug-mode-map':

   - `edebug-Go-nonstop-mode' originally mapped on `G'

[yas] Prepared just-in-time loading of snippets successfully. [2 times]

Symbol's value as variable is void: helm-bookmark-map

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/usr/share/emacs24/site-lisp/auctex/toolbar-x hides /usr/share/emacs/site-lisp/auctex/toolbar-x

/usr/share/emacs24/site-lisp/auctex/tex-jp hides /usr/share/emacs/site-lisp/auctex/tex-jp

/usr/share/emacs24/site-lisp/auctex/context-en hides /usr/share/emacs/site-lisp/auctex/context-en

Features:

(shadow sort mail-extr emacsbug message rfc822 mml mml-sec mailabbrev

gmm-utils mailheader sendmail mail-utils two-column iso-transl css-mode

smie helm-projectile dired open-junk-file company-files company-keywords

company-etags company-gtags company-template company-dabbrev-code

company-dabbrev company-web-html company-web company-css

web-completion-data php-extras company drupal-mode drupal/emacs-drush

drupal/flycheck drupal/phpcs drupal/ispell drupal/etags drupal/eldoc sql

view php-mode cc-langs speedbar sb-image ezimage dframe flymake add-log

cc-mode cc-fonts cc-guess cc-menus cc-cmds cc-styles cc-align cc-engine

cc-vars cc-defs emmet-mode evil-matchit goto-addr bug-reference

auto-highlight-symbol highlight-numbers parent-mode

highlight-parentheses hideshow rainbow-delimiters yasnippet

smartparens-html web-mode helm-command helm-elisp helm-eval edebug eldoc

helm-info helm-descbinds helm-mode helm-files helm-buffers helm-tags

helm-locate helm-grep helm-regexp helm-external helm-net browse-url xml

url url-proxy url-privacy url-expand url-methods url-history url-cookie

url-domsuf url-util mailcap helm-utils helm-help helm-types helm-flx

helm helm-source helm-multi-match helm-lib async projectile grep compile

ibuf-ext ibuffer recentf tree-widget highlight-indentation desktop

frameset mode-icons rainbow-mode minimap sublimity-scroll sublimity

hl-todo server xterm-color ws-butler winum winner etags

volatile-highlights vi-tilde-fringe spaceline-config spaceline-segments

spaceline powerline powerline-separators color powerline-themes

smartparens-config saveplace savehist popwin persp-mode linum info+

image-mode flycheck-pos-tip pos-tip flycheck find-func seq seq-24

flx-ido flx eyebrowse format-spec evil-unimpaired f s evil-surround

evil-search-highlight-persist evil-numbers evil-lisp-state smartparens

dash evil-indent-plus evil-exchange evil-escape evil-args evil-anzu anzu

mule-util eval-sexp-fu rx highlight noutline outline drupal/pcomplete

clean-aindent-mode adaptive-wrap hybrid-mode exec-path-from-shell

evil-evilified-state which-key use-package diminish bind-key hydra lv

cus-edit cus-start cus-load evil evil-integration undo-tree diff

evil-maps evil-commands flyspell ispell evil-jumps evil-command-window

evil-types evil-search evil-ex shell pcomplete comint ansi-color

evil-macros evil-repeat evil-states evil-core evil-common windmove

thingatpt rect evil-digraphs evil-vars ring info bind-map finder-inf

quelpa url-parse auth-source gnus-util password-cache url-vars

package-build mm-decode mm-bodies mm-encode mail-parse rfc2231 rfc2047

rfc2045 ietf-drums mm-util mail-prsvr json lisp-mnt hl-line xt-mouse

autorevert filenotify disp-table wid-edit spacemacs-light-theme

spacemacs-common core-configuration-layer ht cl help-mode warnings

package epg-config eieio byte-opt bytecomp byte-compile cl-extra cconv

eieio-core ido-vertical-mode ido core-spacemacs core-use-package-ext

core-transient-state core-micro-state core-toggle core-keybindings

core-fonts-support core-spacemacs-buffer core-funcs cl-macs gv

core-themes-support core-display-init core-jump core-auto-completion

core-release-management core-dotspacemacs core-command-line core-debug

edmacro kmacro derived advice help-fns profiler easymenu pcase

cl-loaddefs cl-lib page-break-lines easy-mmode subr-x preview-latex

tex-site auto-loads time-date tooltip electric uniquify ediff-hook

vc-hooks lisp-float-type mwheel x-win x-dnd tool-bar dnd fontset image

regexp-opt fringe tabulated-list newcomment lisp-mode prog-mode register

page menu-bar rfn-eshadow timer select scroll-bar mouse jit-lock

font-lock syntax facemenu font-core frame cham georgian utf-8-lang

misc-lang vietnamese tibetan thai tai-viet lao korean japanese hebrew

greek romanian slovak czech european ethiopic indian cyrillic chinese

case-table epa-hook jka-cmpr-hook help simple abbrev minibuffer nadvice

loaddefs button faces cus-face macroexp files text-properties overlay

sha1 md5 base64 format env code-pages mule custom widget

hashtable-print-readable backquote make-network-process dbusbind

gfilenotify dynamic-setting system-font-setting font-render-setting

move-toolbar gtk x-toolkit x multi-tty emacs)

Memory information:

((conses 16 666500 731954)

 (symbols 48 59375 73)

 (miscs 40 1413 712)

 (strings 32 145820 395316)

 (string-bytes 1 5042071)

 (vectors 16 56289)

 (vector-slots 8 1102385 374850)

 (floats 8 2027 3783)

 (intervals 56 3203 713)

 (buffers 960 22)

 (heap 1024 124835 60774))