I changed the variables they do not seem to make a difference. The page is still scrolled out of view

     (with-current-buffer output-buffer
      (setq scroll-margin 30)
      (setq scroll-conservatively 30)
      (setq scroll-down-aggressively 0.5)
      (setq scroll-up-aggressively 0.5)

What would you like me to test for on the window-scroll-hooks?

-pre start-file-process-shell-command
-time 16:50:54


-start-file-process-shell-command called
-time 16:50:55


  shell-ouput-buf
  POS: 1
  time: 16:50:55


-switched to shell-ouput-buf
-time 16:50:55


-inside with-current-buffer - pre go to point min
-time 16:50:55


-pre find-file-other-window
-time 16:50:55


  shell-ouput-buf
  POS: 1
  time: 16:50:55


  shell-ouput-buf
  POS: 1
  time: 16:50:55


  readme
  POS: 1
  time: 16:50:55


-post find-file-other-window
-time 16:50:55


-test code end
-time 16:50:55


  shell-ouput-buf
  POS: 5237
  time: 16:50:55


  shell-ouput-buf
  POS: 5237
  time: 16:50:57